| TF name | Position | PWM scan score |
| ArcA | 327-387 | 21.266 |
| OmpR | 360-379 | 18.367 |
| CysB | 123-164 | 16.484 |
| GadE | 78-97 | 16.474 |
| MarA | 154-174 | 15.320 |
| CytR | 317-356 | 15.213 |
| GlpR | 75-94 | 14.519 |
| NagC | 280-302 | 14.372 |
| GcvA | 344-372 | 14.052 |
| PhoP | 147-163 | 14.048 |
| Rob | 147-167 | 13.778 |
| GntR | 218-237 | 13.348 |
| H-NS | 81-95 | 13.024 |
| FNR | 76-97 | 12.961 |
| Fis | 348-368 | 12.923 |
| UxuR | 29-46 | 12.509 |
| IHF | 85-97 | 12.437 |
| AraC | 83-100 | 12.025 |
| FadR | 66-82 | 11.914 |
| DeoR | 357-372 | 11.907 |
| UlaR | 249-268 | 11.512 |
| OxyR | 22-66 | 11.297 |
| GalR | 357-372 | 11.130 |
| GalS | 357-372 | 11.130 |
| Nac | 219-233 | 10.853 |
| CpxR | 158-172 | 10.841 |
| XylR | 257-274 | 10.771 |
| ArgR | 354-369 | 10.688 |
| ArgP | 59-71 | 10.636 |
| Mlc | 264-286 | 10.571 |
| AgaR | 281-304 | 10.539 |
| ModE | 44-70 | 10.490 |
| RcsB | 221-234 | 10.234 |
| Lrp | 57-68 | 9.909 |
| FruR | 33-50 | 9.868 |
| IdnR | 354-369 | 9.838 |
| NarL | 228-234 | 9.729 |
| CRP | 281-302 | 9.638 |
| PhoB | 152-171 | 9.377 |
| MelR | 346-363 | 9.272 |
| Fur | 156-170 | 9.270 |
| NorR | 35-51 | 9.137 |
| TyrR | 309-330 | 8.796 |
| DnaA | 266-274 | 8.618 |
| PspF | 344-360 | 8.570 |
| MetR | 250-273 | 8.396 |
| LexA | 57-76 | 8.292 |
| FhlA | 57-96 | 8.238 |
| NtrC | 52-68 | 8.195 |
| TorR | 379-388 | 7.973 |
| SoxS | 156-173 | 7.623 |
| NarP | 242-248 | 7.281 |
| MetJ | 249-256 | 6.590 |
| DcuR | 38-92 | 5.947 |
| CueR | 193-211 | 5.533 |