| TF name | Position | PWM scan score |
| ArcA | 250-310 | 34.487 |
| DcuR | 270-324 | 23.571 |
| CysB | 273-314 | 22.690 |
| OmpR | 368-387 | 19.906 |
| GadE | 302-321 | 18.559 |
| NagC | 287-309 | 17.948 |
| CaiF | 16-60 | 16.052 |
| PhoB | 273-292 | 15.826 |
| IHF | 284-296 | 15.522 |
| GcvA | 245-273 | 15.194 |
| AraC | 35-52 | 15.056 |
| H-NS | 306-320 | 15.000 |
| OxyR | 270-314 | 14.912 |
| MarA | 311-331 | 14.857 |
| CytR | 266-305 | 14.798 |
| AgaR | 331-354 | 14.732 |
| Fis | 270-290 | 14.678 |
| Fur | 7-21 | 14.599 |
| CRP | 255-276 | 14.535 |
| MelR | 243-260 | 14.459 |
| FNR | 17-38 | 14.454 |
| ArgP | 374-386 | 14.353 |
| RcsB | 249-262 | 14.109 |
| UlaR | 276-295 | 13.868 |
| Nac | 360-374 | 13.840 |
| GlpR | 370-389 | 13.696 |
| UxuR | 72-89 | 13.419 |
| SoxS | 298-315 | 13.408 |
| FhlA | 342-381 | 12.774 |
| Mlc | 290-312 | 12.331 |
| GntR | 368-387 | 11.734 |
| Rob | 355-375 | 11.726 |
| TorR | 16-25 | 11.647 |
| XylR | 234-251 | 11.486 |
| PspF | 277-293 | 11.323 |
| ArgR | 1-16 | 10.864 |
| NorR | 36-52 | 10.648 |
| FruR | 48-65 | 10.544 |
| IdnR | 363-378 | 10.543 |
| DeoR | 259-274 | 10.401 |
| CpxR | 367-381 | 10.351 |
| Lrp | 340-351 | 10.059 |
| DnaA | 85-93 | 9.747 |
| PhoP | 242-258 | 9.533 |
| TyrR | 75-96 | 9.422 |
| GalR | 18-33 | 9.363 |
| GalS | 18-33 | 9.363 |
| NarL | 305-311 | 9.240 |
| Ada | 355-382 | 9.172 |
| ModE | 315-341 | 9.141 |
| NarP | 284-290 | 7.740 |
| NtrC | 249-265 | 7.557 |
| MetR | 360-383 | 6.196 |
| MetJ | 293-300 | 6.031 |
| FadR | 268-284 | 5.889 |
| RhaS | 7-23 | 5.795 |
| LacI | 125-145 | 5.233 |