| TF name | Position | PWM scan score |
| ArcA | 259-319 | 27.037 |
| CysB | 267-308 | 20.157 |
| DcuR | 267-321 | 18.471 |
| FNR | 271-292 | 18.427 |
| CytR | 345-384 | 18.278 |
| XylR | 192-209 | 15.773 |
| CpxR | 280-294 | 15.702 |
| Fis | 370-390 | 15.127 |
| ModE | 271-297 | 14.875 |
| H-NS | 257-271 | 14.238 |
| CRP | 268-289 | 14.129 |
| OxyR | 326-370 | 13.526 |
| IHF | 271-283 | 13.336 |
| OmpR | 375-394 | 13.185 |
| AgaR | 315-338 | 12.870 |
| GntR | 3-22 | 12.791 |
| GadE | 292-311 | 12.766 |
| Lrp | 378-389 | 12.701 |
| UlaR | 264-283 | 12.545 |
| ArgP | 41-53 | 12.306 |
| Mlc | 276-298 | 12.079 |
| DeoR | 289-304 | 11.995 |
| Ada | 310-337 | 11.942 |
| TyrR | 193-214 | 11.936 |
| NtrC | 283-299 | 11.739 |
| GcvA | 371-399 | 11.598 |
| Nac | 377-391 | 11.334 |
| SoxS | 303-320 | 11.292 |
| MetR | 256-279 | 11.226 |
| LacI | 146-166 | 11.045 |
| Rob | 280-300 | 10.936 |
| RcsB | 344-357 | 10.817 |
| NagC | 258-280 | 10.748 |
| MarA | 77-97 | 10.746 |
| PhoP | 80-96 | 10.681 |
| Fur | 79-93 | 9.511 |
| TorR | 346-355 | 9.263 |
| ArgR | 264-279 | 9.261 |
| PhoB | 313-332 | 9.140 |
| GlpR | 307-326 | 8.835 |
| MelR | 111-128 | 8.785 |
| NarP | 18-24 | 8.575 |
| NorR | 96-112 | 8.415 |
| DnaA | 279-287 | 8.304 |
| NarL | 290-296 | 7.927 |
| IdnR | 44-59 | 7.820 |
| AraC | 139-156 | 7.520 |
| UxuR | 43-60 | 7.426 |
| FruR | 255-272 | 7.398 |
| FhlA | 97-136 | 6.869 |
| CaiF | 288-332 | 6.835 |
| PspF | 238-254 | 6.703 |
| FadR | 29-45 | 6.484 |
| MalT | 90-99 | 6.396 |
| MetJ | 168-175 | 5.674 |
| GalR | 365-380 | 5.500 |
| GalS | 365-380 | 5.500 |
| PurR | 1-16 | 5.077 |
| LexA | 286-305 | 5.028 |