| TF name | Position | PWM scan score |
| ArcA | 258-318 | 29.023 |
| CytR | 194-233 | 21.366 |
| OmpR | 108-127 | 20.045 |
| CysB | 332-373 | 19.106 |
| CRP | 263-284 | 17.628 |
| GcvA | 193-221 | 16.956 |
| FNR | 197-218 | 16.940 |
| Nac | 262-276 | 16.660 |
| AgaR | 194-217 | 15.559 |
| H-NS | 362-376 | 15.373 |
| DcuR | 104-158 | 15.278 |
| GadE | 108-127 | 15.221 |
| PhoB | 135-154 | 15.055 |
| MarA | 365-385 | 14.903 |
| PhoP | 367-383 | 14.185 |
| UlaR | 74-93 | 14.111 |
| DeoR | 331-346 | 14.032 |
| CpxR | 331-345 | 13.043 |
| TyrR | 191-212 | 12.821 |
| IHF | 143-155 | 12.761 |
| NagC | 293-315 | 12.560 |
| XylR | 192-209 | 12.082 |
| UxuR | 74-91 | 11.878 |
| SoxS | 367-384 | 11.806 |
| Mlc | 321-343 | 11.466 |
| Fis | 305-325 | 11.342 |
| ModE | 312-338 | 11.048 |
| OxyR | 298-342 | 10.966 |
| TorR | 85-94 | 10.903 |
| RcsB | 74-87 | 10.695 |
| Lrp | 198-209 | 10.560 |
| DnaA | 153-161 | 10.550 |
| MelR | 33-50 | 10.470 |
| Ada | 222-249 | 10.424 |
| Rob | 237-257 | 10.358 |
| Fur | 190-204 | 10.286 |
| IdnR | 63-78 | 10.214 |
| NtrC | 193-209 | 9.510 |
| NarL | 175-181 | 9.482 |
| PspF | 270-286 | 9.265 |
| NorR | 72-88 | 9.137 |
| ArgP | 372-384 | 8.862 |
| GlpR | 370-389 | 8.842 |
| ArgR | 140-155 | 8.644 |
| MetR | 270-293 | 8.321 |
| NarP | 193-199 | 8.306 |
| FadR | 278-294 | 7.710 |
| AraC | 115-132 | 7.468 |
| MetJ | 10-17 | 7.386 |
| FruR | 42-59 | 7.363 |
| FhlA | 325-364 | 7.341 |
| RhaS | 235-251 | 6.510 |
| CueR | 234-252 | 6.312 |
| LexA | 72-91 | 6.302 |
| CaiF | 352-396 | 6.100 |
| MalT | 324-333 | 5.911 |
| GntR | 118-137 | 5.186 |
| GalS | 160-175 | 5.073 |
| GalR | 160-175 | 5.073 |