| TF name | Position | PWM scan score |
| ArcA | 317-377 | 28.446 |
| OxyR | 111-155 | 24.540 |
| CysB | 321-362 | 22.212 |
| CaiF | 284-328 | 21.051 |
| AgaR | 36-59 | 20.940 |
| ModE | 354-380 | 20.492 |
| CRP | 362-383 | 18.391 |
| GcvA | 34-62 | 17.445 |
| DeoR | 358-373 | 16.849 |
| Fis | 309-329 | 16.790 |
| FNR | 320-341 | 16.593 |
| OmpR | 351-370 | 15.960 |
| SoxS | 102-119 | 15.831 |
| Mlc | 347-369 | 15.161 |
| H-NS | 353-367 | 14.866 |
| UlaR | 39-58 | 14.751 |
| TyrR | 300-321 | 14.375 |
| CpxR | 260-274 | 14.106 |
| RcsB | 235-248 | 13.766 |
| IHF | 303-315 | 13.489 |
| CytR | 228-267 | 13.302 |
| FadR | 327-343 | 13.093 |
| MetR | 298-321 | 13.016 |
| GntR | 362-381 | 12.686 |
| NagC | 41-63 | 12.481 |
| PhoP | 302-318 | 12.419 |
| PspF | 316-332 | 12.206 |
| FruR | 143-160 | 12.157 |
| Fur | 231-245 | 12.029 |
| Rob | 303-323 | 11.723 |
| Nac | 205-219 | 11.569 |
| MarA | 100-120 | 11.539 |
| Lrp | 362-373 | 11.304 |
| ArgP | 229-241 | 11.165 |
| MelR | 221-238 | 11.143 |
| PhoB | 307-326 | 11.115 |
| Ada | 337-364 | 10.985 |
| AraC | 186-203 | 10.892 |
| GlpR | 242-261 | 10.692 |
| LacI | 4-24 | 10.528 |
| DcuR | 221-275 | 10.057 |
| TorR | 13-22 | 9.980 |
| ArgR | 227-242 | 9.881 |
| GadE | 218-237 | 9.846 |
| FhlA | 313-352 | 9.419 |
| XylR | 313-330 | 8.626 |
| DnaA | 132-140 | 8.492 |
| NarL | 283-289 | 8.033 |
| IdnR | 347-362 | 7.874 |
| RhaS | 152-168 | 7.723 |
| GalR | 349-364 | 7.573 |
| GalS | 349-364 | 7.573 |
| UxuR | 309-326 | 6.459 |
| NorR | 206-222 | 6.035 |
| MetJ | 351-358 | 5.992 |
| MalT | 37-46 | 5.303 |