| TF name | Position | PWM scan score |
| ArcA | 54-114 | 27.138 |
| CysB | 188-229 | 20.454 |
| Rob | 293-313 | 19.470 |
| NagC | 363-385 | 18.790 |
| OxyR | 338-382 | 18.619 |
| GcvA | 291-319 | 18.076 |
| OmpR | 346-365 | 17.942 |
| Fur | 85-99 | 17.900 |
| PhoP | 339-355 | 17.659 |
| AgaR | 72-95 | 17.357 |
| Ada | 63-90 | 16.431 |
| RcsB | 375-388 | 16.408 |
| Nac | 373-387 | 15.237 |
| CytR | 52-91 | 15.155 |
| Mlc | 358-380 | 15.136 |
| XylR | 210-227 | 15.067 |
| FNR | 82-103 | 14.662 |
| TorR | 241-250 | 14.494 |
| SoxS | 188-205 | 14.359 |
| UlaR | 73-92 | 13.547 |
| CRP | 85-106 | 13.418 |
| Fis | 92-112 | 13.287 |
| IHF | 290-302 | 13.216 |
| Lrp | 78-89 | 12.952 |
| H-NS | 150-164 | 12.703 |
| TyrR | 145-166 | 12.344 |
| MelR | 159-176 | 12.247 |
| DcuR | 302-356 | 12.098 |
| DeoR | 219-234 | 11.937 |
| ModE | 284-310 | 11.848 |
| PhoB | 317-336 | 11.779 |
| LacI | 343-363 | 11.364 |
| AraC | 95-112 | 10.988 |
| IdnR | 335-350 | 10.909 |
| CpxR | 330-344 | 10.856 |
| GntR | 245-264 | 10.679 |
| ArgP | 84-96 | 10.433 |
| NarL | 75-81 | 10.377 |
| PspF | 325-341 | 10.272 |
| UxuR | 164-181 | 10.011 |
| NorR | 377-393 | 9.604 |
| GlpR | 184-203 | 9.462 |
| RhaS | 31-47 | 9.442 |
| ArgR | 376-391 | 9.408 |
| GadE | 248-267 | 8.730 |
| LexA | 370-389 | 8.485 |
| CaiF | 67-111 | 8.225 |
| DnaA | 83-91 | 8.160 |
| MarA | 289-309 | 8.107 |
| MetJ | 356-363 | 7.925 |
| FhlA | 60-99 | 7.497 |
| MetR | 347-370 | 7.169 |
| FruR | 210-227 | 6.259 |
| NarP | 8-14 | 6.176 |
| FadR | 42-58 | 5.381 |
| GalR | 255-270 | 5.297 |
| GalS | 255-270 | 5.297 |
| NtrC | 133-149 | 5.241 |