| TF name | Position | PWM scan score |
| ArcA | 328-388 | 28.708 |
| OmpR | 362-381 | 20.162 |
| CysB | 356-397 | 19.572 |
| Fur | 274-288 | 18.118 |
| AgaR | 353-376 | 17.352 |
| GadE | 255-274 | 17.248 |
| OxyR | 119-163 | 15.930 |
| DcuR | 89-143 | 15.878 |
| GcvA | 80-108 | 15.852 |
| AraC | 223-240 | 15.077 |
| FNR | 370-391 | 14.540 |
| MetR | 75-98 | 14.356 |
| NagC | 366-388 | 14.326 |
| IHF | 295-307 | 13.765 |
| Nac | 369-383 | 13.523 |
| SoxS | 294-311 | 13.250 |
| Rob | 332-352 | 13.217 |
| H-NS | 368-382 | 13.076 |
| PhoB | 79-98 | 12.707 |
| RcsB | 374-387 | 12.405 |
| ArgR | 262-277 | 12.400 |
| UlaR | 358-377 | 12.323 |
| Mlc | 90-112 | 12.170 |
| CytR | 214-253 | 12.096 |
| Fis | 369-389 | 12.010 |
| XylR | 102-119 | 12.001 |
| TyrR | 376-397 | 11.812 |
| GalR | 269-284 | 11.794 |
| GalS | 269-284 | 11.794 |
| MelR | 360-377 | 11.247 |
| MarA | 259-279 | 11.190 |
| Lrp | 108-119 | 11.078 |
| CpxR | 46-60 | 11.008 |
| ArgP | 107-119 | 10.977 |
| CRP | 76-97 | 10.867 |
| IdnR | 3-18 | 10.570 |
| PhoP | 349-365 | 10.315 |
| UxuR | 356-373 | 9.934 |
| ModE | 319-345 | 9.569 |
| FadR | 59-75 | 9.557 |
| DeoR | 304-319 | 9.291 |
| FruR | 337-354 | 8.915 |
| GntR | 365-384 | 8.889 |
| DnaA | 372-380 | 8.866 |
| RhaS | 274-290 | 8.803 |
| NarP | 178-184 | 8.594 |
| TorR | 130-139 | 8.594 |
| LacI | 274-294 | 8.530 |
| NorR | 132-148 | 7.979 |
| PspF | 130-146 | 7.640 |
| GlpR | 258-277 | 7.545 |
| NarL | 224-230 | 7.544 |
| TrpR | 176-193 | 7.415 |
| Ada | 349-376 | 7.389 |
| LexA | 285-304 | 7.369 |
| PurR | 275-290 | 7.040 |
| FhlA | 185-224 | 6.961 |
| MalT | 190-199 | 6.729 |
| MetJ | 223-230 | 5.744 |