| TF name | Position | PWM scan score |
| CaiF | 296-340 | 22.987 |
| ArcA | 211-271 | 20.019 |
| OmpR | 244-263 | 18.797 |
| AgaR | 324-347 | 18.751 |
| PhoP | 243-259 | 17.703 |
| DcuR | 240-294 | 17.504 |
| FNR | 235-256 | 17.116 |
| ModE | 155-181 | 16.235 |
| CysB | 209-250 | 16.013 |
| GadE | 244-263 | 15.771 |
| ArgR | 329-344 | 15.615 |
| H-NS | 247-261 | 15.308 |
| Nac | 333-347 | 15.132 |
| OxyR | 263-307 | 14.922 |
| Fis | 246-266 | 14.841 |
| DeoR | 200-215 | 13.851 |
| IHF | 326-338 | 13.404 |
| Mlc | 198-220 | 12.934 |
| NagC | 49-71 | 12.898 |
| RcsB | 89-102 | 12.786 |
| SoxS | 375-392 | 12.521 |
| ArgP | 252-264 | 11.939 |
| CytR | 300-339 | 11.882 |
| UlaR | 327-346 | 11.813 |
| CRP | 8-29 | 11.701 |
| NorR | 289-305 | 11.370 |
| GcvA | 277-305 | 11.286 |
| Lrp | 246-257 | 11.121 |
| GlpR | 136-155 | 10.827 |
| TyrR | 325-346 | 10.695 |
| MarA | 314-334 | 10.344 |
| CpxR | 288-302 | 10.304 |
| DnaA | 164-172 | 10.218 |
| IdnR | 55-70 | 10.204 |
| PhoB | 195-214 | 9.972 |
| NarL | 251-257 | 9.580 |
| AraC | 20-37 | 9.337 |
| XylR | 133-150 | 9.312 |
| Fur | 326-340 | 9.251 |
| TorR | 220-229 | 9.050 |
| LacI | 63-83 | 8.893 |
| Ada | 124-151 | 8.675 |
| LexA | 206-225 | 8.344 |
| NarP | 299-305 | 8.306 |
| MetJ | 101-108 | 7.986 |
| RhaS | 20-36 | 7.918 |
| UxuR | 54-71 | 7.795 |
| MelR | 315-332 | 6.732 |
| GntR | 301-320 | 6.727 |
| Rob | 237-257 | 6.525 |
| FhlA | 201-240 | 6.510 |
| PspF | 35-51 | 6.072 |
| MetR | 321-344 | 5.540 |
| MalT | 176-185 | 5.534 |