| TF name | Position | PWM scan score |
| ArcA | 82-142 | 17.974 |
| CysB | 175-216 | 17.700 |
| MarA | 24-44 | 15.976 |
| PspF | 300-316 | 15.624 |
| FNR | 367-388 | 15.316 |
| FhlA | 234-273 | 14.849 |
| PhoP | 309-325 | 14.432 |
| Fis | 32-52 | 14.287 |
| CRP | 76-97 | 13.723 |
| IdnR | 365-380 | 13.266 |
| OmpR | 29-48 | 12.749 |
| DeoR | 375-390 | 12.095 |
| Nac | 107-121 | 11.926 |
| Ada | 265-292 | 11.596 |
| GlpR | 32-51 | 11.527 |
| NorR | 93-109 | 11.467 |
| H-NS | 31-45 | 10.620 |
| GntR | 6-25 | 10.404 |
| MetR | 290-313 | 10.239 |
| AraC | 139-156 | 10.153 |
| IHF | 304-316 | 10.007 |
| ArgR | 208-223 | 9.997 |
| Fur | 24-38 | 9.896 |
| Rob | 298-318 | 9.810 |
| GadE | 30-49 | 9.790 |
| UxuR | 359-376 | 9.457 |
| RhaS | 112-128 | 9.442 |
| Mlc | 34-56 | 9.437 |
| UlaR | 142-161 | 9.416 |
| PhoB | 90-109 | 9.235 |
| TyrR | 25-46 | 9.001 |
| CpxR | 38-52 | 8.676 |
| RcsB | 286-299 | 8.649 |
| ArgP | 45-57 | 8.497 |
| NarL | 5-11 | 8.481 |
| GalR | 80-95 | 8.467 |
| GalS | 80-95 | 8.467 |
| Lrp | 36-47 | 8.395 |
| GcvA | 364-392 | 8.293 |
| NarP | 199-205 | 7.965 |
| MetJ | 175-182 | 7.917 |
| SoxS | 26-43 | 7.695 |
| CytR | 214-253 | 7.681 |
| FruR | 320-337 | 7.533 |
| DnaA | 110-118 | 7.532 |
| NagC | 374-396 | 7.017 |
| TorR | 141-150 | 7.016 |
| OxyR | 80-124 | 6.844 |
| ModE | 122-148 | 6.787 |
| LexA | 4-23 | 6.565 |
| MalT | 313-322 | 6.544 |
| AgaR | 32-55 | 5.637 |
| NtrC | 15-31 | 5.592 |
| PurR | 294-309 | 5.264 |
| XylR | 101-118 | 5.211 |
| CaiF | 36-80 | 5.142 |