| TF name | Position | PWM scan score |
| ArcA | 215-275 | 32.184 |
| CytR | 300-339 | 21.309 |
| DcuR | 209-263 | 18.313 |
| OmpR | 366-385 | 16.861 |
| CysB | 212-253 | 16.019 |
| ArgR | 211-226 | 15.532 |
| GcvA | 362-390 | 15.508 |
| PhoB | 358-377 | 15.462 |
| Nac | 264-278 | 14.817 |
| OxyR | 213-257 | 14.694 |
| RcsB | 368-381 | 14.256 |
| AgaR | 216-239 | 14.095 |
| MarA | 212-232 | 14.014 |
| MetR | 294-317 | 14.001 |
| CpxR | 97-111 | 13.993 |
| CRP | 324-345 | 13.981 |
| DeoR | 363-378 | 13.844 |
| ModE | 327-353 | 13.709 |
| H-NS | 379-393 | 13.092 |
| TorR | 256-265 | 12.728 |
| Lrp | 367-378 | 12.701 |
| SoxS | 368-385 | 12.602 |
| FNR | 309-330 | 12.523 |
| IHF | 219-231 | 12.409 |
| Rob | 7-27 | 12.101 |
| UxuR | 228-245 | 12.056 |
| TyrR | 211-232 | 11.968 |
| PspF | 323-339 | 11.867 |
| ArgP | 14-26 | 11.860 |
| Ada | 297-324 | 11.670 |
| GadE | 271-290 | 11.247 |
| PhoP | 138-154 | 11.202 |
| GlpR | 326-345 | 11.109 |
| MelR | 63-80 | 10.335 |
| IdnR | 305-320 | 10.308 |
| XylR | 298-315 | 10.305 |
| Fis | 325-345 | 10.298 |
| Fur | 212-226 | 10.129 |
| Mlc | 314-336 | 9.594 |
| NorR | 38-54 | 9.345 |
| UlaR | 238-257 | 9.295 |
| NtrC | 376-392 | 9.236 |
| NarL | 17-23 | 9.129 |
| AraC | 242-259 | 9.037 |
| NarP | 205-211 | 8.496 |
| MetJ | 242-249 | 8.430 |
| RhaS | 76-92 | 8.267 |
| NagC | 316-338 | 8.174 |
| GalS | 336-351 | 7.789 |
| GalR | 336-351 | 7.789 |
| MalT | 251-260 | 7.632 |
| FadR | 363-379 | 7.272 |
| GntR | 196-215 | 6.973 |
| DnaA | 77-85 | 5.585 |
| LacI | 336-356 | 5.364 |
| LexA | 77-96 | 5.250 |
| FruR | 370-387 | 5.229 |