| TF name | Position | PWM scan score |
| ArcA | 156-216 | 31.224 |
| DcuR | 82-136 | 18.095 |
| PhoP | 12-28 | 17.265 |
| FNR | 360-381 | 17.157 |
| CysB | 104-145 | 16.988 |
| OmpR | 108-127 | 16.147 |
| H-NS | 15-29 | 16.122 |
| PhoB | 127-146 | 15.495 |
| Fis | 8-28 | 15.447 |
| RcsB | 156-169 | 15.387 |
| CytR | 125-164 | 14.966 |
| Mlc | 366-388 | 14.481 |
| SoxS | 239-256 | 14.048 |
| AgaR | 123-146 | 13.559 |
| PspF | 232-248 | 13.539 |
| ArgR | 20-35 | 13.529 |
| GadE | 20-39 | 13.124 |
| IdnR | 238-253 | 13.068 |
| AraC | 131-148 | 12.950 |
| NagC | 8-30 | 12.894 |
| Lrp | 240-251 | 12.846 |
| ArgP | 239-251 | 12.787 |
| GcvA | 94-122 | 12.686 |
| Rob | 24-44 | 12.349 |
| CpxR | 14-28 | 12.287 |
| IHF | 27-39 | 12.166 |
| OxyR | 129-173 | 11.981 |
| MarA | 109-129 | 11.966 |
| Fur | 125-139 | 11.874 |
| ModE | 232-258 | 11.770 |
| GntR | 95-114 | 11.573 |
| CRP | 130-151 | 11.322 |
| TyrR | 176-197 | 11.158 |
| TorR | 158-167 | 10.148 |
| DnaA | 368-376 | 10.111 |
| UxuR | 225-242 | 10.028 |
| XylR | 312-329 | 9.385 |
| MetR | 144-167 | 9.337 |
| UlaR | 362-381 | 9.297 |
| Nac | 123-137 | 9.211 |
| DeoR | 113-128 | 9.158 |
| NarL | 132-138 | 9.129 |
| NorR | 288-304 | 9.043 |
| Ada | 347-374 | 8.977 |
| FruR | 229-246 | 8.789 |
| MalT | 350-359 | 8.610 |
| FadR | 115-131 | 8.090 |
| LexA | 296-315 | 6.919 |
| GlpR | 374-393 | 6.895 |
| GalR | 191-206 | 6.748 |
| GalS | 191-206 | 6.748 |
| MetJ | 210-217 | 6.561 |
| CaiF | 103-147 | 6.532 |
| MelR | 177-194 | 6.363 |
| NtrC | 12-28 | 6.246 |
| FhlA | 2-41 | 5.723 |
| RhaS | 131-147 | 5.393 |
| LacI | 42-62 | 5.196 |
| NarP | 363-369 | 5.080 |