| TF name | Position | PWM scan score |
| ArcA | 231-291 | 29.609 |
| CysB | 32-73 | 21.596 |
| OmpR | 228-247 | 20.644 |
| FNR | 367-388 | 18.522 |
| AgaR | 22-45 | 18.236 |
| GcvA | 227-255 | 18.207 |
| OxyR | 111-155 | 17.506 |
| GntR | 311-330 | 17.268 |
| CRP | 264-285 | 17.251 |
| TyrR | 226-247 | 16.621 |
| H-NS | 230-244 | 16.074 |
| Mlc | 213-235 | 15.246 |
| MarA | 265-285 | 15.034 |
| PhoB | 202-221 | 14.935 |
| GlpR | 264-283 | 14.733 |
| TorR | 43-52 | 14.535 |
| CytR | 213-252 | 14.283 |
| ArgR | 268-283 | 14.202 |
| NagC | 345-367 | 13.734 |
| Ada | 152-179 | 13.365 |
| MetR | 218-241 | 13.251 |
| XylR | 226-243 | 13.177 |
| RcsB | 2-15 | 13.146 |
| UxuR | 17-34 | 12.697 |
| Fis | 163-183 | 12.667 |
| UlaR | 180-199 | 12.511 |
| DcuR | 226-280 | 12.491 |
| GadE | 270-289 | 12.392 |
| ArgP | 369-381 | 12.103 |
| IHF | 228-240 | 12.072 |
| Fur | 375-389 | 11.893 |
| ModE | 219-245 | 11.827 |
| CpxR | 379-393 | 11.493 |
| AraC | 298-315 | 11.295 |
| PhoP | 237-253 | 11.273 |
| IdnR | 306-321 | 11.097 |
| Lrp | 230-241 | 10.984 |
| Nac | 345-359 | 10.573 |
| PspF | 181-197 | 10.336 |
| MelR | 82-99 | 10.127 |
| FhlA | 342-381 | 9.968 |
| SoxS | 3-20 | 9.477 |
| Rob | 228-248 | 9.379 |
| FruR | 31-48 | 9.070 |
| DnaA | 175-183 | 9.041 |
| RhaS | 163-179 | 8.988 |
| NorR | 97-113 | 8.959 |
| DeoR | 189-204 | 8.890 |
| NarL | 308-314 | 8.681 |
| GalS | 196-211 | 8.630 |
| GalR | 196-211 | 8.630 |
| LexA | 259-278 | 8.324 |
| NtrC | 108-124 | 8.138 |
| PurR | 309-324 | 8.029 |
| NarP | 132-138 | 7.762 |
| FadR | 226-242 | 6.940 |
| MalT | 327-336 | 6.785 |
| LacI | 171-191 | 6.395 |