| TF name | Position | PWM scan score |
| CysB | 336-377 | 21.596 |
| NagC | 296-318 | 19.832 |
| AgaR | 326-349 | 18.236 |
| ArcA | 332-392 | 17.844 |
| MetR | 104-127 | 15.712 |
| CRP | 362-383 | 15.080 |
| TorR | 347-356 | 14.535 |
| FNR | 367-388 | 14.366 |
| TyrR | 222-243 | 14.354 |
| PurR | 110-125 | 13.475 |
| H-NS | 378-392 | 13.324 |
| UxuR | 1-18 | 13.231 |
| RcsB | 306-319 | 13.146 |
| Mlc | 371-393 | 12.538 |
| TrpR | 209-226 | 12.314 |
| UlaR | 367-386 | 11.967 |
| CpxR | 157-171 | 11.959 |
| OmpR | 308-327 | 11.852 |
| XylR | 305-322 | 11.834 |
| MelR | 131-148 | 11.734 |
| IdnR | 162-177 | 11.453 |
| IHF | 134-146 | 11.316 |
| LacI | 163-183 | 10.981 |
| GcvA | 303-331 | 10.622 |
| Lrp | 159-170 | 10.557 |
| NarL | 74-80 | 10.377 |
| Ada | 351-378 | 10.327 |
| Nac | 362-376 | 9.853 |
| OxyR | 295-339 | 9.686 |
| SoxS | 300-317 | 9.499 |
| FruR | 111-128 | 9.441 |
| Fis | 120-140 | 9.275 |
| RhaS | 232-248 | 9.168 |
| PhoB | 370-389 | 9.128 |
| ArgP | 209-221 | 8.824 |
| DcuR | 312-366 | 8.650 |
| PhoP | 150-166 | 8.228 |
| GntR | 112-131 | 8.203 |
| GlpR | 64-83 | 8.192 |
| CytR | 298-337 | 8.179 |
| FadR | 23-39 | 8.065 |
| MarA | 113-133 | 7.985 |
| DeoR | 68-83 | 7.946 |
| ModE | 16-42 | 7.655 |
| Rob | 101-121 | 7.402 |
| FhlA | 30-69 | 7.385 |
| DnaA | 88-96 | 7.135 |
| ArgR | 61-76 | 7.081 |
| NorR | 153-169 | 7.079 |
| GadE | 102-121 | 6.748 |
| PspF | 46-62 | 6.592 |
| AraC | 354-371 | 6.502 |
| NarP | 195-201 | 6.464 |
| Fur | 306-320 | 6.251 |
| GalR | 110-125 | 6.138 |
| GalS | 110-125 | 6.138 |
| MalT | 83-92 | 5.955 |