| TF name | Position | PWM scan score |
| ArcA | 66-126 | 28.757 |
| OxyR | 185-229 | 18.881 |
| Mlc | 80-102 | 18.141 |
| CysB | 106-147 | 18.133 |
| TyrR | 86-107 | 17.096 |
| NagC | 90-112 | 16.500 |
| CytR | 96-135 | 16.462 |
| GadE | 295-314 | 14.476 |
| AraC | 100-117 | 14.404 |
| RcsB | 76-89 | 14.068 |
| ArgP | 212-224 | 13.617 |
| FNR | 204-225 | 13.320 |
| UxuR | 297-314 | 13.231 |
| GalS | 237-252 | 13.090 |
| GalR | 237-252 | 13.090 |
| H-NS | 212-226 | 12.811 |
| Rob | 211-231 | 12.760 |
| GcvA | 144-172 | 12.556 |
| OmpR | 212-231 | 12.401 |
| SoxS | 69-86 | 12.314 |
| PhoB | 215-234 | 12.176 |
| IHF | 100-112 | 12.170 |
| DcuR | 59-113 | 12.132 |
| DnaA | 172-180 | 12.065 |
| PspF | 229-245 | 11.246 |
| Fis | 79-99 | 11.149 |
| UlaR | 299-318 | 11.109 |
| DeoR | 185-200 | 11.046 |
| CpxR | 176-190 | 10.955 |
| Lrp | 167-178 | 10.737 |
| CRP | 79-100 | 10.730 |
| MelR | 189-206 | 10.444 |
| NarL | 60-66 | 10.377 |
| MetJ | 109-116 | 9.765 |
| MarA | 67-87 | 9.734 |
| NorR | 90-106 | 8.976 |
| GntR | 106-125 | 8.671 |
| PhoP | 48-64 | 8.637 |
| Nac | 1-15 | 8.505 |
| GlpR | 360-379 | 8.192 |
| FadR | 319-335 | 8.065 |
| AgaR | 194-217 | 8.062 |
| TorR | 385-394 | 7.891 |
| RhaS | 112-128 | 7.851 |
| Fur | 109-123 | 7.689 |
| ModE | 312-338 | 7.655 |
| LexA | 203-222 | 7.582 |
| XylR | 87-104 | 7.569 |
| FhlA | 326-365 | 7.385 |
| ArgR | 185-200 | 7.086 |
| MalT | 379-388 | 5.955 |
| IdnR | 112-127 | 5.940 |
| NarP | 388-394 | 5.342 |