| TF name | Position | PWM scan score |
| ArcA | 228-288 | 35.051 |
| CysB | 234-275 | 24.770 |
| OmpR | 237-256 | 24.683 |
| OxyR | 346-390 | 20.898 |
| CytR | 319-358 | 20.190 |
| PhoB | 238-257 | 20.098 |
| FNR | 364-385 | 18.933 |
| ModE | 47-73 | 18.360 |
| Fur | 344-358 | 18.201 |
| GcvA | 302-330 | 16.869 |
| LexA | 167-186 | 16.857 |
| TyrR | 361-382 | 16.573 |
| AgaR | 352-375 | 15.761 |
| GadE | 372-391 | 15.546 |
| Fis | 336-356 | 14.991 |
| ArgP | 40-52 | 14.749 |
| DeoR | 115-130 | 14.727 |
| NagC | 363-385 | 14.700 |
| MetR | 108-131 | 14.208 |
| ArgR | 81-96 | 14.024 |
| H-NS | 240-254 | 13.895 |
| Ada | 347-374 | 13.893 |
| CRP | 365-386 | 13.765 |
| Mlc | 362-384 | 13.475 |
| MarA | 364-384 | 13.324 |
| RcsB | 318-331 | 13.318 |
| FruR | 210-227 | 12.909 |
| XylR | 362-379 | 12.881 |
| IHF | 38-50 | 12.743 |
| Lrp | 41-52 | 12.528 |
| UlaR | 340-359 | 11.949 |
| Nac | 369-383 | 11.655 |
| CpxR | 319-333 | 11.634 |
| Rob | 39-59 | 11.312 |
| NorR | 88-104 | 11.145 |
| TrpR | 367-384 | 11.069 |
| DcuR | 220-274 | 10.957 |
| GntR | 39-58 | 10.903 |
| SoxS | 315-332 | 10.855 |
| PspF | 351-367 | 10.692 |
| AraC | 231-248 | 10.648 |
| FhlA | 7-46 | 10.081 |
| MelR | 153-170 | 9.819 |
| NarL | 319-325 | 9.580 |
| PhoP | 271-287 | 9.482 |
| PurR | 327-342 | 9.379 |
| DnaA | 64-72 | 9.379 |
| IdnR | 232-247 | 8.955 |
| MetJ | 287-294 | 8.762 |
| GlpR | 239-258 | 8.667 |
| NarP | 166-172 | 7.965 |
| TorR | 203-212 | 7.334 |
| UxuR | 197-214 | 7.221 |
| NtrC | 258-274 | 6.994 |
| LacI | 213-233 | 6.781 |
| GalR | 327-342 | 6.757 |
| GalS | 327-342 | 6.757 |
| FadR | 16-32 | 6.002 |