| TF name | Position | PWM scan score |
| ArcA | 138-198 | 28.288 |
| FNR | 238-259 | 20.823 |
| OmpR | 289-308 | 18.991 |
| CysB | 73-114 | 18.522 |
| PhoP | 249-265 | 16.146 |
| H-NS | 173-187 | 16.005 |
| CytR | 303-342 | 15.974 |
| AgaR | 84-107 | 15.656 |
| ArgR | 171-186 | 15.453 |
| CRP | 184-205 | 15.323 |
| NorR | 231-247 | 14.761 |
| RcsB | 321-334 | 14.729 |
| GcvA | 321-349 | 14.652 |
| OxyR | 293-337 | 14.543 |
| Mlc | 57-79 | 13.974 |
| UlaR | 235-254 | 13.706 |
| NagC | 86-108 | 13.661 |
| IHF | 317-329 | 13.292 |
| GadE | 87-106 | 12.692 |
| Fur | 238-252 | 12.678 |
| DeoR | 92-107 | 12.645 |
| Rob | 309-329 | 12.479 |
| ArgP | 98-110 | 12.063 |
| AraC | 30-47 | 11.747 |
| XylR | 300-317 | 11.578 |
| CpxR | 239-253 | 11.563 |
| Fis | 164-184 | 11.400 |
| TyrR | 248-269 | 11.077 |
| MelR | 75-92 | 11.064 |
| Ada | 314-341 | 10.552 |
| MetR | 313-336 | 10.547 |
| ModE | 151-177 | 10.457 |
| PhoB | 55-74 | 10.168 |
| GntR | 133-152 | 10.106 |
| Nac | 88-102 | 9.952 |
| UxuR | 12-29 | 9.914 |
| DcuR | 284-338 | 9.547 |
| IdnR | 177-192 | 9.143 |
| SoxS | 245-262 | 9.105 |
| Lrp | 289-300 | 9.067 |
| NarL | 204-210 | 8.928 |
| MarA | 57-77 | 8.660 |
| PspF | 110-126 | 8.281 |
| FadR | 305-321 | 8.140 |
| PurR | 377-392 | 8.037 |
| FhlA | 162-201 | 7.726 |
| NtrC | 321-337 | 7.715 |
| MetJ | 299-306 | 7.677 |
| NarP | 164-170 | 7.347 |
| TorR | 267-276 | 7.334 |
| DnaA | 309-317 | 7.165 |
| GlpR | 306-325 | 7.157 |
| MalT | 85-94 | 7.129 |
| LacI | 238-258 | 6.301 |
| GalR | 60-75 | 6.053 |
| GalS | 60-75 | 6.053 |