| TF name | Position | PWM scan score |
| ArcA | 231-291 | 22.618 |
| GadE | 300-319 | 18.787 |
| NagC | 237-259 | 18.726 |
| FNR | 313-334 | 17.392 |
| UlaR | 72-91 | 16.650 |
| SoxS | 253-270 | 14.678 |
| Fur | 313-327 | 14.006 |
| CytR | 50-89 | 13.957 |
| ArgR | 261-276 | 13.871 |
| CpxR | 239-253 | 13.417 |
| CRP | 310-331 | 13.290 |
| IHF | 313-325 | 12.862 |
| OmpR | 371-390 | 12.564 |
| DeoR | 348-363 | 12.561 |
| Fis | 251-271 | 12.329 |
| CysB | 247-288 | 11.903 |
| PhoP | 306-322 | 11.790 |
| ModE | 211-237 | 11.699 |
| MetR | 317-340 | 11.372 |
| PhoB | 141-160 | 11.150 |
| GcvA | 369-397 | 11.109 |
| GlpR | 312-331 | 10.919 |
| MelR | 70-87 | 10.650 |
| NorR | 74-90 | 10.487 |
| AgaR | 73-96 | 10.447 |
| NarL | 67-73 | 10.130 |
| H-NS | 273-287 | 10.091 |
| Ada | 63-90 | 9.988 |
| LexA | 212-231 | 9.945 |
| OxyR | 274-318 | 9.870 |
| LacI | 366-386 | 9.863 |
| MarA | 243-263 | 9.832 |
| NtrC | 359-375 | 9.735 |
| TyrR | 218-239 | 9.713 |
| Lrp | 316-327 | 9.578 |
| AraC | 49-66 | 9.397 |
| MetJ | 248-255 | 9.382 |
| ArgP | 89-101 | 9.316 |
| Nac | 250-264 | 9.140 |
| DcuR | 62-116 | 8.791 |
| FhlA | 241-280 | 8.731 |
| IdnR | 218-233 | 8.703 |
| RcsB | 223-236 | 8.625 |
| PurR | 324-339 | 8.428 |
| Mlc | 77-99 | 8.402 |
| PspF | 301-317 | 8.214 |
| XylR | 177-194 | 8.168 |
| GntR | 250-269 | 7.863 |
| FadR | 383-399 | 7.563 |
| NarP | 223-229 | 7.489 |
| Rob | 103-123 | 7.293 |
| UxuR | 262-279 | 6.979 |
| TorR | 127-136 | 6.651 |
| MalT | 172-181 | 6.246 |
| DnaA | 318-326 | 6.103 |