| TF name | Position | PWM scan score |
| ArcA | 213-273 | 32.136 |
| CysB | 342-383 | 23.408 |
| OxyR | 241-285 | 20.038 |
| MetR | 245-268 | 18.423 |
| CytR | 258-297 | 17.560 |
| Fur | 270-284 | 16.142 |
| GcvA | 221-249 | 16.056 |
| GadE | 78-97 | 15.746 |
| CRP | 258-279 | 15.676 |
| PhoP | 234-250 | 15.424 |
| NagC | 204-226 | 14.770 |
| DeoR | 107-122 | 14.532 |
| IdnR | 317-332 | 14.515 |
| XylR | 344-361 | 14.505 |
| Nac | 307-321 | 14.388 |
| OmpR | 262-281 | 14.233 |
| Mlc | 350-372 | 14.048 |
| CpxR | 242-256 | 14.012 |
| MarA | 71-91 | 13.916 |
| TyrR | 25-46 | 13.654 |
| FNR | 172-193 | 13.525 |
| Lrp | 233-244 | 13.493 |
| AgaR | 290-313 | 12.891 |
| ArgR | 367-382 | 12.777 |
| ArgP | 349-361 | 12.627 |
| IHF | 272-284 | 12.539 |
| H-NS | 47-61 | 12.425 |
| SoxS | 73-90 | 12.187 |
| LexA | 176-195 | 12.165 |
| PhoB | 247-266 | 12.040 |
| MetJ | 377-384 | 11.889 |
| Fis | 241-261 | 11.656 |
| Ada | 285-312 | 11.499 |
| MelR | 340-357 | 11.207 |
| TorR | 135-144 | 11.171 |
| ModE | 356-382 | 10.503 |
| GalR | 283-298 | 10.236 |
| GalS | 283-298 | 10.236 |
| Rob | 363-383 | 10.010 |
| UlaR | 250-269 | 9.958 |
| NorR | 355-371 | 9.926 |
| PspF | 236-252 | 9.604 |
| NarL | 238-244 | 9.580 |
| FruR | 315-332 | 9.419 |
| NtrC | 273-289 | 9.078 |
| RcsB | 168-181 | 8.908 |
| GlpR | 262-281 | 8.634 |
| DcuR | 227-281 | 8.583 |
| PurR | 283-298 | 8.434 |
| FhlA | 201-240 | 7.834 |
| LacI | 260-280 | 7.795 |
| AraC | 345-362 | 7.776 |
| GntR | 285-304 | 7.638 |
| DnaA | 352-360 | 6.590 |
| NarP | 248-254 | 6.176 |
| FadR | 46-62 | 5.634 |
| UxuR | 246-263 | 5.633 |
| MalT | 360-369 | 5.463 |