| TF name | Position | PWM scan score |
| ArcA | 92-152 | 34.597 |
| DcuR | 320-374 | 29.779 |
| CysB | 93-134 | 28.000 |
| NagC | 310-332 | 23.460 |
| OxyR | 95-139 | 21.782 |
| PhoP | 334-350 | 20.212 |
| CytR | 73-112 | 19.291 |
| GcvA | 320-348 | 18.800 |
| AgaR | 104-127 | 17.855 |
| Mlc | 367-389 | 17.717 |
| LexA | 209-228 | 17.441 |
| CRP | 106-127 | 16.940 |
| Fur | 307-321 | 16.630 |
| PspF | 130-146 | 16.141 |
| GadE | 113-132 | 15.723 |
| ArgR | 211-226 | 15.697 |
| FNR | 114-135 | 15.450 |
| OmpR | 325-344 | 15.450 |
| Ada | 349-376 | 15.175 |
| XylR | 236-253 | 14.750 |
| CpxR | 325-339 | 14.502 |
| TorR | 117-126 | 14.333 |
| GalR | 291-306 | 14.169 |
| GalS | 291-306 | 14.169 |
| Fis | 339-359 | 14.141 |
| Nac | 110-124 | 14.047 |
| IHF | 324-336 | 13.946 |
| ArgP | 137-149 | 13.725 |
| AraC | 100-117 | 13.369 |
| IdnR | 93-108 | 13.246 |
| RcsB | 106-119 | 13.136 |
| Lrp | 120-131 | 12.582 |
| ModE | 324-350 | 12.481 |
| PhoB | 150-169 | 12.415 |
| H-NS | 141-155 | 12.381 |
| Rob | 7-27 | 12.322 |
| FruR | 176-193 | 12.171 |
| UlaR | 303-322 | 12.140 |
| MelR | 277-294 | 11.943 |
| UxuR | 76-93 | 10.629 |
| PurR | 291-306 | 10.539 |
| SoxS | 220-237 | 10.361 |
| NorR | 312-328 | 9.859 |
| MarA | 337-357 | 9.849 |
| FadR | 132-148 | 9.734 |
| NarP | 83-89 | 9.543 |
| TyrR | 217-238 | 9.412 |
| GntR | 109-128 | 8.507 |
| NtrC | 153-169 | 8.430 |
| NarL | 326-332 | 7.791 |
| DeoR | 316-331 | 7.613 |
| GlpR | 108-127 | 7.283 |
| MetR | 104-127 | 6.590 |
| MetJ | 32-39 | 6.347 |
| DnaA | 373-381 | 5.806 |
| LacI | 348-368 | 5.411 |
| MalT | 362-371 | 5.034 |