| TF name | Position | PWM scan score |
| ArcA | 226-286 | 24.787 |
| CytR | 246-285 | 19.834 |
| GcvA | 103-131 | 19.046 |
| CysB | 248-289 | 16.654 |
| PspF | 269-285 | 15.013 |
| OmpR | 188-207 | 14.713 |
| FNR | 183-204 | 14.670 |
| MarA | 357-377 | 14.403 |
| NagC | 247-269 | 14.173 |
| Mlc | 64-86 | 13.887 |
| TyrR | 104-125 | 13.445 |
| GadE | 247-266 | 13.424 |
| Rob | 161-181 | 13.287 |
| IHF | 260-272 | 12.883 |
| DcuR | 234-288 | 12.777 |
| OxyR | 206-250 | 12.554 |
| CRP | 257-278 | 12.552 |
| RcsB | 242-255 | 12.522 |
| ArgP | 255-267 | 12.280 |
| ModE | 315-341 | 12.163 |
| Fis | 187-207 | 12.013 |
| H-NS | 40-54 | 11.595 |
| AgaR | 240-263 | 11.431 |
| GlpR | 189-208 | 11.255 |
| UxuR | 42-59 | 11.099 |
| MetR | 233-256 | 10.910 |
| GntR | 126-145 | 10.854 |
| Nac | 252-266 | 10.847 |
| SoxS | 351-368 | 10.726 |
| Fur | 272-286 | 10.725 |
| PhoB | 55-74 | 10.240 |
| DeoR | 45-60 | 10.223 |
| AraC | 123-140 | 10.197 |
| Lrp | 241-252 | 10.111 |
| ArgR | 236-251 | 9.806 |
| NtrC | 301-317 | 9.795 |
| UlaR | 189-208 | 9.766 |
| FruR | 290-307 | 8.959 |
| TorR | 263-272 | 8.848 |
| PhoP | 323-339 | 8.415 |
| IdnR | 134-149 | 8.411 |
| DnaA | 255-263 | 8.245 |
| NarL | 255-261 | 7.995 |
| PurR | 238-253 | 7.942 |
| Ada | 240-267 | 7.789 |
| MelR | 56-73 | 7.419 |
| MetJ | 324-331 | 7.297 |
| LacI | 243-263 | 7.023 |
| CpxR | 198-212 | 6.850 |
| XylR | 48-65 | 6.840 |
| NarP | 260-266 | 6.794 |
| CueR | 16-34 | 6.614 |
| NorR | 204-220 | 6.404 |
| GalR | 67-82 | 5.374 |
| GalS | 67-82 | 5.374 |