| TF name | Position | PWM scan score |
| ArcA | 331-391 | 32.406 |
| OxyR | 339-383 | 19.241 |
| CytR | 343-382 | 19.145 |
| GcvA | 358-386 | 19.101 |
| OmpR | 363-382 | 17.720 |
| ModE | 240-266 | 16.463 |
| CysB | 353-394 | 16.397 |
| PhoB | 361-380 | 16.016 |
| CRP | 344-365 | 15.897 |
| AgaR | 366-389 | 15.746 |
| AraC | 74-91 | 15.479 |
| H-NS | 351-365 | 15.456 |
| XylR | 359-376 | 15.133 |
| SoxS | 338-355 | 14.847 |
| IHF | 352-364 | 14.700 |
| FNR | 343-364 | 14.449 |
| GadE | 373-392 | 14.063 |
| MetR | 117-140 | 13.885 |
| MarA | 345-365 | 13.557 |
| NagC | 347-369 | 13.445 |
| FruR | 349-366 | 13.371 |
| CpxR | 373-387 | 13.259 |
| UlaR | 366-385 | 12.970 |
| Fis | 129-149 | 12.546 |
| Mlc | 345-367 | 12.499 |
| Fur | 368-382 | 12.108 |
| ArgP | 369-381 | 12.092 |
| FhlA | 132-171 | 11.885 |
| DeoR | 348-363 | 11.442 |
| MelR | 358-375 | 11.234 |
| TorR | 131-140 | 11.105 |
| Ada | 350-377 | 11.002 |
| PhoP | 113-129 | 10.341 |
| Lrp | 368-379 | 10.078 |
| LexA | 130-149 | 9.964 |
| MetJ | 174-181 | 9.765 |
| RcsB | 159-172 | 9.705 |
| Rob | 328-348 | 9.299 |
| Nac | 191-205 | 9.066 |
| GlpR | 292-311 | 9.041 |
| TyrR | 338-359 | 9.013 |
| DnaA | 114-122 | 8.703 |
| PspF | 340-356 | 8.382 |
| ArgR | 357-372 | 8.282 |
| RhaS | 129-145 | 8.079 |
| UxuR | 344-361 | 7.943 |
| NarL | 372-378 | 7.927 |
| NarP | 255-261 | 7.762 |
| NorR | 75-91 | 7.371 |
| NtrC | 122-138 | 7.327 |
| GalS | 348-363 | 7.046 |
| GalR | 348-363 | 7.046 |
| MalT | 9-18 | 6.763 |
| LacI | 361-381 | 6.459 |
| GntR | 344-363 | 6.346 |
| IdnR | 371-386 | 6.269 |
| DcuR | 324-378 | 5.672 |
| FadR | 58-74 | 5.061 |