| TF name | Position | PWM scan score |
| ArcA | 236-296 | 22.284 |
| MarA | 131-151 | 19.827 |
| CysB | 249-290 | 19.335 |
| CytR | 263-302 | 19.057 |
| GntR | 52-71 | 17.419 |
| OmpR | 366-385 | 16.302 |
| GcvA | 238-266 | 15.890 |
| Rob | 173-193 | 15.852 |
| SoxS | 133-150 | 15.312 |
| H-NS | 369-383 | 15.072 |
| Nac | 174-188 | 14.749 |
| NagC | 361-383 | 14.648 |
| PhoP | 168-184 | 14.197 |
| FNR | 161-182 | 14.017 |
| IHF | 170-182 | 13.549 |
| GlpR | 280-299 | 13.313 |
| CRP | 367-388 | 13.223 |
| Fur | 112-126 | 13.209 |
| Fis | 171-191 | 13.186 |
| OxyR | 258-302 | 12.774 |
| Mlc | 268-290 | 12.712 |
| PhoB | 366-385 | 12.670 |
| AgaR | 350-373 | 12.567 |
| MetR | 252-275 | 12.492 |
| GadE | 250-269 | 12.400 |
| ModE | 68-94 | 11.779 |
| CpxR | 366-380 | 11.614 |
| Lrp | 363-374 | 10.767 |
| LacI | 197-217 | 10.679 |
| UxuR | 164-181 | 10.367 |
| UlaR | 2-21 | 9.998 |
| FruR | 239-256 | 9.957 |
| XylR | 171-188 | 9.905 |
| DcuR | 258-312 | 9.614 |
| ArgP | 283-295 | 9.612 |
| PspF | 163-179 | 9.456 |
| DeoR | 284-299 | 9.410 |
| MelR | 351-368 | 9.343 |
| TorR | 250-259 | 9.091 |
| MalT | 96-105 | 9.063 |
| NarL | 131-137 | 8.951 |
| RcsB | 263-276 | 8.880 |
| MetJ | 272-279 | 8.714 |
| ArgR | 366-381 | 8.669 |
| AraC | 107-124 | 8.465 |
| IdnR | 324-339 | 8.223 |
| DnaA | 169-177 | 8.131 |
| TyrR | 364-385 | 8.131 |
| FadR | 335-351 | 7.468 |
| NtrC | 331-347 | 7.055 |
| Ada | 67-94 | 6.929 |
| TrpR | 51-68 | 6.888 |
| NarP | 161-167 | 6.781 |
| PurR | 95-110 | 6.604 |
| NorR | 249-265 | 6.196 |