| TF name | Position | PWM scan score |
| ArcA | 331-391 | 22.882 |
| Rob | 77-97 | 20.178 |
| RcsB | 170-183 | 15.136 |
| FNR | 374-395 | 14.763 |
| OmpR | 78-97 | 14.359 |
| GcvA | 370-398 | 13.893 |
| Fis | 2-22 | 13.848 |
| MarA | 63-83 | 12.548 |
| XylR | 75-92 | 11.996 |
| PhoB | 349-368 | 11.789 |
| IHF | 184-196 | 11.585 |
| PhoP | 87-103 | 11.531 |
| Ada | 181-208 | 11.495 |
| FruR | 281-298 | 11.374 |
| SoxS | 263-280 | 11.035 |
| GadE | 251-270 | 11.006 |
| Lrp | 358-369 | 10.974 |
| DeoR | 354-369 | 10.824 |
| ArgR | 312-327 | 10.816 |
| AgaR | 282-305 | 10.723 |
| OxyR | 276-320 | 10.677 |
| CpxR | 354-368 | 10.669 |
| CysB | 237-278 | 10.461 |
| H-NS | 360-374 | 10.353 |
| MetJ | 331-338 | 9.980 |
| NagC | 78-100 | 9.945 |
| ArgP | 357-369 | 9.860 |
| DnaA | 182-190 | 9.795 |
| PspF | 293-309 | 9.792 |
| Nac | 333-347 | 9.660 |
| UlaR | 36-55 | 9.573 |
| GlpR | 213-232 | 9.450 |
| DcuR | 87-141 | 9.382 |
| NorR | 210-226 | 9.221 |
| AraC | 167-184 | 9.131 |
| CytR | 74-113 | 8.559 |
| Fur | 370-384 | 8.355 |
| CRP | 196-217 | 8.342 |
| TorR | 379-388 | 7.696 |
| TyrR | 352-373 | 7.428 |
| LexA | 310-329 | 7.312 |
| NarL | 219-225 | 7.279 |
| MelR | 353-370 | 7.259 |
| GalS | 59-74 | 7.096 |
| GalR | 59-74 | 7.096 |
| NarP | 124-130 | 6.794 |
| MetR | 161-184 | 6.603 |
| FhlA | 337-376 | 6.110 |
| Mlc | 363-385 | 6.094 |
| UxuR | 181-198 | 6.093 |
| ModE | 217-243 | 6.021 |
| LacI | 15-35 | 5.777 |
| GntR | 371-390 | 5.564 |
| MalT | 331-340 | 5.130 |
| FadR | 354-370 | 5.113 |