| TF name | Position | PWM scan score |
| ArcA | 334-394 | 25.998 |
| CysB | 345-386 | 18.730 |
| Ada | 22-49 | 17.374 |
| ArgR | 31-46 | 16.918 |
| Nac | 357-371 | 16.405 |
| OmpR | 367-386 | 15.538 |
| UlaR | 347-366 | 15.483 |
| Mlc | 349-371 | 15.113 |
| CRP | 319-340 | 15.010 |
| AgaR | 347-370 | 14.922 |
| GntR | 350-369 | 14.322 |
| H-NS | 369-383 | 14.019 |
| IHF | 238-250 | 13.984 |
| Fur | 32-46 | 13.935 |
| CytR | 140-179 | 13.859 |
| PhoP | 364-380 | 13.818 |
| XylR | 34-51 | 13.708 |
| RcsB | 140-153 | 13.625 |
| OxyR | 332-376 | 13.501 |
| Fis | 360-380 | 13.483 |
| IdnR | 289-304 | 13.061 |
| GadE | 176-195 | 12.511 |
| CpxR | 66-80 | 12.427 |
| LacI | 111-131 | 12.371 |
| ModE | 358-384 | 11.603 |
| FNR | 302-323 | 11.528 |
| FruR | 341-358 | 11.205 |
| DeoR | 323-338 | 11.186 |
| TorR | 358-367 | 10.649 |
| NorR | 343-359 | 10.648 |
| NagC | 358-380 | 10.607 |
| LexA | 221-240 | 10.603 |
| PhoB | 318-337 | 10.475 |
| GcvA | 216-244 | 10.362 |
| SoxS | 137-154 | 10.326 |
| MarA | 135-155 | 9.954 |
| Lrp | 352-363 | 9.761 |
| NarL | 34-40 | 9.580 |
| AraC | 328-345 | 9.284 |
| ArgP | 138-150 | 8.726 |
| DnaA | 43-51 | 8.632 |
| NtrC | 277-293 | 8.621 |
| FadR | 123-139 | 8.387 |
| TrpR | 14-31 | 8.098 |
| DcuR | 328-382 | 8.069 |
| MetJ | 113-120 | 8.047 |
| TyrR | 176-197 | 7.958 |
| NarP | 124-130 | 7.489 |
| MelR | 23-40 | 7.481 |
| MetR | 318-341 | 7.169 |
| PurR | 215-230 | 7.069 |
| PspF | 100-116 | 6.767 |
| UxuR | 140-157 | 6.432 |
| GlpR | 371-390 | 6.314 |
| Rob | 358-378 | 6.287 |
| MalT | 355-364 | 5.781 |