| TF name | Position | PWM scan score |
| ArcA | 127-187 | 30.252 |
| CysB | 134-175 | 25.714 |
| GadE | 160-179 | 24.675 |
| Mlc | 157-179 | 22.250 |
| NagC | 152-174 | 22.066 |
| GcvA | 148-176 | 19.263 |
| CytR | 128-167 | 17.890 |
| MelR | 121-138 | 17.843 |
| MarA | 365-385 | 15.931 |
| OmpR | 153-172 | 15.728 |
| OxyR | 78-122 | 15.582 |
| DeoR | 240-255 | 15.291 |
| PhoB | 171-190 | 15.097 |
| FNR | 98-119 | 14.859 |
| AgaR | 308-331 | 14.856 |
| CRP | 95-116 | 14.491 |
| H-NS | 95-109 | 14.085 |
| RcsB | 152-165 | 13.890 |
| IHF | 124-136 | 13.686 |
| Fur | 149-163 | 13.652 |
| IdnR | 82-97 | 13.088 |
| TyrR | 150-171 | 13.052 |
| UlaR | 311-330 | 12.939 |
| ArgR | 120-135 | 12.676 |
| Fis | 38-58 | 12.653 |
| XylR | 91-108 | 11.834 |
| ArgP | 362-374 | 11.371 |
| Lrp | 374-385 | 11.364 |
| DcuR | 110-164 | 11.252 |
| GlpR | 97-116 | 11.071 |
| FadR | 232-248 | 10.694 |
| NorR | 314-330 | 10.648 |
| MetR | 300-323 | 10.432 |
| NarL | 126-132 | 10.241 |
| AraC | 89-106 | 10.003 |
| FhlA | 148-187 | 9.820 |
| Ada | 111-138 | 9.417 |
| PhoP | 156-172 | 9.264 |
| FruR | 368-385 | 9.119 |
| PspF | 83-99 | 9.097 |
| Nac | 96-110 | 9.033 |
| DnaA | 135-143 | 8.836 |
| SoxS | 171-188 | 8.832 |
| Rob | 296-316 | 8.221 |
| LacI | 229-249 | 8.124 |
| CpxR | 152-166 | 7.610 |
| TorR | 270-279 | 7.167 |
| ModE | 143-169 | 7.093 |
| TrpR | 362-379 | 6.837 |
| LexA | 66-85 | 6.821 |
| UxuR | 264-281 | 6.529 |
| CueR | 374-392 | 5.889 |
| NtrC | 272-288 | 5.704 |
| MalT | 56-65 | 5.498 |
| GntR | 211-230 | 5.431 |
| NarP | 127-133 | 5.080 |