| TF name | Position | PWM scan score |
| OxyR | 194-238 | 21.658 |
| Fur | 58-72 | 17.856 |
| ArcA | 251-311 | 17.729 |
| AgaR | 195-218 | 16.650 |
| Fis | 290-310 | 16.227 |
| IHF | 130-142 | 16.010 |
| GlpR | 135-154 | 15.886 |
| OmpR | 200-219 | 15.492 |
| PhoB | 201-220 | 15.349 |
| SoxS | 284-301 | 15.039 |
| CRP | 256-277 | 14.932 |
| IdnR | 195-210 | 14.683 |
| GcvA | 270-298 | 14.056 |
| H-NS | 134-148 | 13.647 |
| CytR | 325-364 | 12.534 |
| DeoR | 206-221 | 12.116 |
| Nac | 56-70 | 12.087 |
| FNR | 196-217 | 12.056 |
| XylR | 204-221 | 11.744 |
| ArgR | 60-75 | 11.659 |
| Rob | 243-263 | 11.122 |
| DnaA | 78-86 | 11.093 |
| CpxR | 197-211 | 10.675 |
| AraC | 72-89 | 10.348 |
| UlaR | 254-273 | 10.313 |
| GadE | 251-270 | 10.301 |
| MetR | 328-351 | 10.195 |
| Lrp | 132-143 | 10.187 |
| UxuR | 65-82 | 9.840 |
| NorR | 317-333 | 9.765 |
| CysB | 19-60 | 9.634 |
| MarA | 57-77 | 9.581 |
| TorR | 195-204 | 9.517 |
| NtrC | 58-74 | 9.467 |
| TyrR | 127-148 | 9.219 |
| GalR | 158-173 | 9.201 |
| GalS | 158-173 | 9.201 |
| NarL | 1-7 | 9.129 |
| Mlc | 270-292 | 9.086 |
| DcuR | 58-112 | 8.838 |
| ModE | 315-341 | 8.798 |
| NagC | 183-205 | 8.766 |
| NarP | 217-223 | 8.660 |
| Ada | 358-385 | 8.480 |
| FadR | 17-33 | 8.101 |
| MalT | 187-196 | 7.786 |
| RcsB | 195-208 | 7.527 |
| GntR | 200-219 | 7.384 |
| MelR | 315-332 | 7.307 |
| LacI | 163-183 | 6.882 |
| ArgP | 387-399 | 6.671 |
| FruR | 340-357 | 6.432 |
| PspF | 261-277 | 6.421 |
| MetJ | 117-124 | 6.347 |
| PhoP | 283-299 | 6.243 |
| TrpR | 207-224 | 6.142 |
| LexA | 275-294 | 5.838 |
| RhaS | 84-100 | 5.602 |