| TF name | Position | PWM scan score |
| ArcA | 32-92 | 31.591 |
| Mlc | 68-90 | 26.086 |
| GcvA | 66-94 | 21.721 |
| CysB | 347-388 | 19.423 |
| OmpR | 56-75 | 18.597 |
| DcuR | 325-379 | 17.389 |
| PhoB | 57-76 | 17.381 |
| CytR | 226-265 | 17.215 |
| GadE | 342-361 | 17.209 |
| NagC | 70-92 | 16.167 |
| OxyR | 53-97 | 16.045 |
| CRP | 66-87 | 15.398 |
| DeoR | 62-77 | 15.355 |
| AgaR | 64-87 | 14.545 |
| GntR | 122-141 | 14.234 |
| MetR | 57-80 | 14.053 |
| IHF | 119-131 | 13.679 |
| FNR | 131-152 | 13.564 |
| H-NS | 65-79 | 13.149 |
| ArgR | 346-361 | 12.206 |
| XylR | 179-196 | 12.146 |
| PhoP | 345-361 | 12.123 |
| FhlA | 112-151 | 12.031 |
| Rob | 69-89 | 12.015 |
| Fis | 59-79 | 11.981 |
| Lrp | 66-77 | 11.921 |
| SoxS | 214-231 | 11.874 |
| UlaR | 62-81 | 11.868 |
| MarA | 68-88 | 11.762 |
| NorR | 71-87 | 11.031 |
| GlpR | 68-87 | 10.797 |
| CpxR | 119-133 | 10.792 |
| Nac | 114-128 | 10.545 |
| ModE | 55-81 | 10.501 |
| ArgP | 65-77 | 10.433 |
| UxuR | 164-181 | 9.850 |
| TyrR | 49-70 | 9.578 |
| MetJ | 56-63 | 9.447 |
| TrpR | 80-97 | 9.389 |
| RcsB | 122-135 | 9.164 |
| Fur | 66-80 | 8.898 |
| AraC | 299-316 | 8.808 |
| FadR | 259-275 | 8.788 |
| IdnR | 320-335 | 8.787 |
| Ada | 49-76 | 8.692 |
| LexA | 329-348 | 8.391 |
| PspF | 294-310 | 8.298 |
| NarL | 50-56 | 7.950 |
| DnaA | 117-125 | 7.194 |
| TorR | 220-229 | 7.039 |
| PurR | 84-99 | 6.878 |
| LacI | 164-184 | 6.734 |
| MelR | 263-280 | 5.924 |