| TF name | Position | PWM scan score |
| ArcA | 168-228 | 24.166 |
| CysB | 358-399 | 20.705 |
| OxyR | 352-396 | 17.766 |
| CytR | 293-332 | 17.675 |
| FNR | 375-396 | 17.142 |
| NagC | 366-388 | 17.000 |
| PhoB | 296-315 | 16.997 |
| GadE | 379-398 | 16.212 |
| SoxS | 200-217 | 16.042 |
| Nac | 349-363 | 15.776 |
| Fis | 97-117 | 15.701 |
| Mlc | 182-204 | 14.690 |
| H-NS | 357-371 | 14.574 |
| GcvA | 203-231 | 14.565 |
| GlpR | 307-326 | 14.485 |
| OmpR | 304-323 | 14.477 |
| PspF | 315-331 | 14.103 |
| IHF | 30-42 | 14.003 |
| Fur | 357-371 | 13.937 |
| MetJ | 51-58 | 13.753 |
| MarA | 75-95 | 13.705 |
| RcsB | 175-188 | 13.663 |
| PhoP | 61-77 | 13.610 |
| TorR | 257-266 | 13.235 |
| DcuR | 275-329 | 12.800 |
| TyrR | 28-49 | 12.734 |
| AgaR | 364-387 | 12.408 |
| MelR | 220-237 | 12.127 |
| AraC | 144-161 | 12.046 |
| CRP | 212-233 | 11.590 |
| Lrp | 33-44 | 11.536 |
| MetR | 349-372 | 11.196 |
| NorR | 208-224 | 11.192 |
| Rob | 21-41 | 11.131 |
| CaiF | 173-217 | 11.099 |
| CpxR | 31-45 | 10.956 |
| ArgR | 201-216 | 10.810 |
| FruR | 31-48 | 10.760 |
| IdnR | 301-316 | 10.758 |
| ArgP | 142-154 | 10.729 |
| DeoR | 355-370 | 10.617 |
| XylR | 205-222 | 9.868 |
| UlaR | 198-217 | 9.207 |
| ModE | 198-224 | 8.869 |
| GntR | 282-301 | 8.833 |
| Ada | 357-384 | 8.625 |
| RhaS | 215-231 | 8.015 |
| FadR | 253-269 | 7.967 |
| FhlA | 342-381 | 7.718 |
| NarL | 70-76 | 7.483 |
| LacI | 207-227 | 6.912 |
| NarP | 363-369 | 6.879 |
| DnaA | 110-118 | 6.645 |
| MalT | 245-254 | 6.564 |
| PurR | 163-178 | 5.543 |
| NtrC | 242-258 | 5.487 |
| UxuR | 55-72 | 5.166 |