| TF name | Position | PWM scan score |
| ArcA | 275-335 | 31.604 |
| CysB | 314-355 | 23.885 |
| DcuR | 283-337 | 22.329 |
| OmpR | 376-395 | 20.299 |
| GcvA | 128-156 | 19.966 |
| MetR | 311-334 | 19.147 |
| NagC | 179-201 | 19.139 |
| PhoB | 338-357 | 17.439 |
| AgaR | 123-146 | 17.291 |
| CytR | 279-318 | 17.203 |
| FhlA | 281-320 | 17.014 |
| FNR | 309-330 | 16.635 |
| OxyR | 292-336 | 16.510 |
| CRP | 250-271 | 15.676 |
| Mlc | 195-217 | 15.563 |
| Fis | 136-156 | 15.407 |
| PhoP | 207-223 | 15.334 |
| IHF | 156-168 | 14.769 |
| MelR | 297-314 | 14.368 |
| RcsB | 132-145 | 14.096 |
| Fur | 125-139 | 14.008 |
| GadE | 308-327 | 13.966 |
| CpxR | 318-332 | 13.751 |
| Rob | 13-33 | 13.481 |
| XylR | 345-362 | 13.281 |
| Nac | 298-312 | 13.145 |
| UlaR | 316-335 | 13.092 |
| ArgR | 118-133 | 13.081 |
| AraC | 361-378 | 12.702 |
| ArgP | 20-32 | 12.240 |
| LacI | 176-196 | 12.180 |
| PspF | 122-138 | 11.951 |
| H-NS | 256-270 | 11.926 |
| UxuR | 274-291 | 11.881 |
| Lrp | 323-334 | 11.395 |
| SoxS | 61-78 | 11.176 |
| MarA | 193-213 | 10.959 |
| GlpR | 65-84 | 10.889 |
| Ada | 308-335 | 10.492 |
| FruR | 345-362 | 10.433 |
| ModE | 57-83 | 10.163 |
| NarL | 127-133 | 10.130 |
| TyrR | 303-324 | 9.957 |
| GntR | 176-195 | 9.761 |
| DeoR | 8-23 | 9.220 |
| GalR | 198-213 | 8.878 |
| GalS | 198-213 | 8.878 |
| FadR | 221-237 | 8.825 |
| IdnR | 316-331 | 8.418 |
| TorR | 57-66 | 8.078 |
| NorR | 5-21 | 7.462 |
| NarP | 25-31 | 7.423 |
| MetJ | 141-148 | 7.297 |
| DnaA | 260-268 | 7.194 |
| LexA | 69-88 | 6.788 |
| NtrC | 364-380 | 5.668 |
| RhaS | 68-84 | 5.344 |