| TF name | Position | PWM scan score |
| ArcA | 126-186 | 33.592 |
| NagC | 103-125 | 24.223 |
| CytR | 35-74 | 23.326 |
| CysB | 31-72 | 21.901 |
| PhoP | 179-195 | 19.504 |
| OxyR | 254-298 | 19.268 |
| OmpR | 34-53 | 18.654 |
| FNR | 258-279 | 18.455 |
| H-NS | 38-52 | 18.232 |
| CRP | 40-61 | 17.779 |
| GadE | 351-370 | 17.150 |
| DcuR | 255-309 | 16.627 |
| GcvA | 64-92 | 16.342 |
| PhoB | 284-303 | 16.038 |
| Nac | 254-268 | 15.445 |
| UxuR | 165-182 | 15.091 |
| RcsB | 256-269 | 15.062 |
| Mlc | 101-123 | 15.060 |
| IHF | 279-291 | 14.517 |
| Fur | 356-370 | 14.235 |
| UlaR | 57-76 | 13.879 |
| Fis | 12-32 | 13.860 |
| AgaR | 6-29 | 13.714 |
| SoxS | 33-50 | 13.397 |
| ArgP | 38-50 | 12.975 |
| FhlA | 65-104 | 12.858 |
| GntR | 293-312 | 12.808 |
| TyrR | 199-220 | 12.548 |
| AraC | 288-305 | 12.388 |
| Rob | 377-397 | 12.220 |
| CpxR | 171-185 | 12.129 |
| ArgR | 280-295 | 12.093 |
| Lrp | 149-160 | 11.935 |
| XylR | 41-58 | 11.850 |
| MelR | 356-373 | 11.797 |
| FruR | 31-48 | 11.370 |
| ModE | 169-195 | 10.977 |
| MarA | 156-176 | 10.975 |
| MetR | 346-369 | 10.921 |
| TorR | 261-270 | 10.649 |
| IdnR | 60-75 | 10.241 |
| NorR | 261-277 | 10.151 |
| PspF | 379-395 | 10.111 |
| Ada | 134-161 | 9.659 |
| PurR | 1-16 | 9.281 |
| NarL | 115-121 | 9.240 |
| DnaA | 170-178 | 9.060 |
| FadR | 359-375 | 8.703 |
| NtrC | 96-112 | 8.261 |
| DeoR | 171-186 | 8.130 |
| GalS | 375-390 | 7.808 |
| GalR | 375-390 | 7.808 |
| TrpR | 25-42 | 7.764 |
| NarP | 262-268 | 7.740 |
| MalT | 165-174 | 6.938 |
| GlpR | 102-121 | 6.600 |
| MetJ | 23-30 | 6.416 |
| LacI | 6-26 | 6.029 |