| TF name | Position | PWM scan score |
| ArcA | 319-379 | 34.135 |
| CysB | 271-312 | 23.584 |
| Rob | 321-341 | 20.121 |
| OxyR | 262-306 | 18.764 |
| OmpR | 319-338 | 18.650 |
| CytR | 323-362 | 17.956 |
| NagC | 21-43 | 17.569 |
| H-NS | 57-71 | 17.274 |
| GcvA | 223-251 | 16.884 |
| PspF | 353-369 | 16.608 |
| MetR | 146-169 | 16.386 |
| Fur | 318-332 | 15.941 |
| Fis | 358-378 | 15.927 |
| GadE | 323-342 | 15.633 |
| Nac | 266-280 | 15.491 |
| Mlc | 365-387 | 15.430 |
| CRP | 336-357 | 15.268 |
| PhoB | 378-397 | 15.049 |
| FNR | 264-285 | 14.960 |
| DcuR | 79-133 | 14.922 |
| PhoP | 25-41 | 14.523 |
| CpxR | 197-211 | 14.274 |
| MelR | 356-373 | 13.885 |
| AgaR | 179-202 | 13.594 |
| DeoR | 187-202 | 13.489 |
| UlaR | 30-49 | 13.142 |
| IdnR | 138-153 | 12.880 |
| TyrR | 149-170 | 12.784 |
| IHF | 273-285 | 12.773 |
| LacI | 156-176 | 12.549 |
| XylR | 263-280 | 12.447 |
| AraC | 51-68 | 12.140 |
| GlpR | 240-259 | 12.112 |
| MarA | 140-160 | 12.051 |
| Lrp | 361-372 | 11.957 |
| MetJ | 80-87 | 11.889 |
| GntR | 19-38 | 11.881 |
| RcsB | 274-287 | 11.747 |
| ArgP | 33-45 | 11.165 |
| FruR | 65-82 | 10.897 |
| SoxS | 20-37 | 10.827 |
| ArgR | 266-281 | 10.759 |
| ModE | 312-338 | 10.630 |
| NorR | 52-68 | 10.601 |
| Ada | 168-195 | 10.240 |
| NarL | 91-97 | 10.130 |
| LexA | 180-199 | 10.052 |
| DnaA | 208-216 | 8.323 |
| PurR | 151-166 | 7.224 |
| TorR | 129-138 | 7.219 |
| NarP | 267-273 | 6.794 |
| UxuR | 324-341 | 6.610 |
| FhlA | 102-141 | 5.974 |
| FadR | 66-82 | 5.969 |