| TF name | Position | PWM scan score |
| ArcA | 266-326 | 36.360 |
| CysB | 310-351 | 30.033 |
| CytR | 300-339 | 21.908 |
| OxyR | 155-199 | 21.792 |
| ArgR | 165-180 | 19.705 |
| OmpR | 281-300 | 19.466 |
| DcuR | 320-374 | 19.062 |
| NagC | 305-327 | 17.958 |
| AgaR | 364-387 | 16.674 |
| TrpR | 149-166 | 16.433 |
| Rob | 322-342 | 16.284 |
| GlpR | 348-367 | 15.436 |
| H-NS | 230-244 | 15.337 |
| FNR | 303-324 | 15.272 |
| TyrR | 359-380 | 15.258 |
| ModE | 292-318 | 15.213 |
| CRP | 306-327 | 15.110 |
| PhoB | 354-373 | 14.925 |
| GntR | 87-106 | 14.800 |
| UlaR | 355-374 | 14.519 |
| XylR | 360-377 | 14.427 |
| Fis | 108-128 | 14.359 |
| Mlc | 366-388 | 14.346 |
| CpxR | 361-375 | 14.300 |
| DeoR | 184-199 | 14.050 |
| PspF | 283-299 | 13.905 |
| NorR | 285-301 | 13.878 |
| Ada | 240-267 | 13.809 |
| MarA | 265-285 | 13.774 |
| PhoP | 308-324 | 13.743 |
| SoxS | 267-284 | 13.628 |
| GcvA | 358-386 | 13.063 |
| GadE | 336-355 | 12.752 |
| Fur | 331-345 | 12.702 |
| IHF | 57-69 | 12.504 |
| Nac | 34-48 | 12.257 |
| CaiF | 330-374 | 12.077 |
| RcsB | 364-377 | 12.006 |
| Lrp | 254-265 | 11.945 |
| MetR | 287-310 | 11.086 |
| NtrC | 237-253 | 10.489 |
| ArgP | 335-347 | 10.185 |
| AraC | 117-134 | 9.908 |
| IdnR | 310-325 | 9.838 |
| LexA | 178-197 | 9.773 |
| MelR | 194-211 | 9.586 |
| UxuR | 211-228 | 9.467 |
| NarL | 285-291 | 9.333 |
| FadR | 55-71 | 9.101 |
| MetJ | 309-316 | 8.430 |
| DnaA | 371-379 | 8.323 |
| TorR | 73-82 | 7.571 |
| LacI | 8-28 | 7.278 |
| PurR | 99-114 | 7.251 |
| FruR | 174-191 | 7.236 |
| NarP | 18-24 | 6.879 |
| GalS | 319-334 | 6.705 |
| GalR | 319-334 | 6.705 |
| RhaS | 66-82 | 5.052 |