| TF name | Position | PWM scan score |
| ArcA | 299-359 | 38.281 |
| CysB | 321-362 | 28.349 |
| OxyR | 38-82 | 22.458 |
| DcuR | 47-101 | 20.619 |
| AgaR | 299-322 | 19.961 |
| CytR | 347-386 | 19.630 |
| OmpR | 344-363 | 18.058 |
| FNR | 342-363 | 18.043 |
| CpxR | 293-307 | 17.156 |
| NagC | 236-258 | 16.227 |
| Rob | 365-385 | 15.798 |
| MarA | 361-381 | 15.442 |
| TyrR | 3-24 | 15.173 |
| XylR | 228-245 | 14.974 |
| Mlc | 280-302 | 14.616 |
| ArgP | 328-340 | 14.353 |
| CRP | 362-383 | 14.294 |
| FruR | 178-195 | 14.274 |
| Fur | 317-331 | 14.120 |
| H-NS | 63-77 | 13.943 |
| PspF | 93-109 | 13.915 |
| NorR | 367-383 | 13.878 |
| FhlA | 323-362 | 13.764 |
| UxuR | 369-386 | 13.570 |
| GalS | 251-266 | 13.561 |
| GalR | 251-266 | 13.561 |
| Nac | 286-300 | 13.393 |
| PhoP | 281-297 | 13.142 |
| TorR | 279-288 | 12.961 |
| UlaR | 286-305 | 12.913 |
| IHF | 342-354 | 12.849 |
| MetR | 259-282 | 12.615 |
| GcvA | 49-77 | 12.498 |
| DeoR | 366-381 | 12.311 |
| GadE | 347-366 | 12.306 |
| Fis | 317-337 | 12.020 |
| Ada | 304-331 | 11.841 |
| MelR | 298-315 | 11.647 |
| GlpR | 235-254 | 11.091 |
| RcsB | 305-318 | 11.014 |
| NarP | 114-120 | 10.626 |
| ArgR | 23-38 | 10.539 |
| Lrp | 58-69 | 10.481 |
| ModE | 271-297 | 10.447 |
| SoxS | 50-67 | 10.389 |
| PhoB | 241-260 | 9.529 |
| DnaA | 282-290 | 9.246 |
| NarL | 121-127 | 8.681 |
| IdnR | 49-64 | 8.579 |
| RhaS | 30-46 | 8.218 |
| LacI | 20-40 | 7.889 |
| MetJ | 247-254 | 7.733 |
| FadR | 283-299 | 7.290 |
| PurR | 205-220 | 7.154 |
| MalT | 271-280 | 6.729 |
| AraC | 288-305 | 6.650 |
| NtrC | 167-183 | 6.450 |
| GntR | 377-396 | 6.273 |
| TrpR | 286-303 | 5.150 |