| TF name | Position | PWM scan score |
| ArcA | 87-147 | 23.159 |
| CysB | 307-348 | 20.152 |
| OmpR | 311-330 | 19.194 |
| MarA | 358-378 | 16.858 |
| FNR | 99-120 | 16.855 |
| CRP | 96-117 | 16.486 |
| UlaR | 90-109 | 15.428 |
| Fis | 314-334 | 15.131 |
| MelR | 371-388 | 14.968 |
| OxyR | 295-339 | 14.086 |
| RhaS | 24-40 | 13.761 |
| TyrR | 307-328 | 13.493 |
| H-NS | 20-34 | 13.357 |
| NagC | 312-334 | 13.340 |
| IHF | 15-27 | 12.665 |
| Mlc | 308-330 | 12.384 |
| GcvA | 95-123 | 12.064 |
| GalS | 166-181 | 11.964 |
| GalR | 166-181 | 11.964 |
| AgaR | 202-225 | 11.955 |
| PhoP | 130-146 | 11.938 |
| LacI | 358-378 | 11.300 |
| ModE | 246-272 | 11.279 |
| RcsB | 15-28 | 11.214 |
| MetR | 362-385 | 11.132 |
| TorR | 107-116 | 11.105 |
| Nac | 310-324 | 11.038 |
| PhoB | 172-191 | 10.992 |
| SoxS | 158-175 | 10.970 |
| CytR | 358-397 | 10.960 |
| GlpR | 104-123 | 10.707 |
| Lrp | 257-268 | 10.398 |
| Rob | 142-162 | 10.254 |
| GadE | 320-339 | 10.167 |
| NarL | 120-126 | 10.130 |
| FruR | 133-150 | 9.725 |
| Fur | 257-271 | 9.664 |
| ArgP | 25-37 | 9.368 |
| ArgR | 317-332 | 9.275 |
| AraC | 306-323 | 9.148 |
| DeoR | 253-268 | 9.122 |
| Ada | 81-108 | 8.994 |
| UxuR | 196-213 | 8.678 |
| PspF | 357-373 | 8.479 |
| XylR | 308-325 | 8.212 |
| FadR | 55-71 | 8.060 |
| MetJ | 192-199 | 7.171 |
| NarP | 125-131 | 7.078 |
| PurR | 16-31 | 7.078 |
| FhlA | 115-154 | 7.022 |
| DnaA | 106-114 | 6.566 |
| DcuR | 197-251 | 6.299 |
| NorR | 262-278 | 6.290 |
| CpxR | 177-191 | 6.063 |
| LexA | 115-134 | 5.716 |
| NtrC | 200-216 | 5.566 |
| IdnR | 298-313 | 5.134 |
| GntR | 18-37 | 5.102 |