| TF name | Position | PWM scan score |
| ArcA | 273-333 | 34.460 |
| CysB | 286-327 | 23.716 |
| GadE | 195-214 | 23.095 |
| OmpR | 284-303 | 22.114 |
| GcvA | 161-189 | 21.041 |
| AgaR | 147-170 | 20.838 |
| OxyR | 147-191 | 20.794 |
| CytR | 295-334 | 18.607 |
| UlaR | 357-376 | 18.030 |
| Fur | 140-154 | 17.882 |
| TyrR | 276-297 | 17.547 |
| Mlc | 266-288 | 17.523 |
| UxuR | 243-260 | 17.344 |
| Ada | 267-294 | 17.133 |
| PhoP | 174-190 | 16.604 |
| FNR | 270-291 | 16.518 |
| ArgR | 276-291 | 16.147 |
| Rob | 280-300 | 15.840 |
| RcsB | 280-293 | 15.711 |
| DcuR | 321-375 | 15.412 |
| CRP | 285-306 | 15.406 |
| IHF | 145-157 | 15.287 |
| NagC | 195-217 | 15.237 |
| H-NS | 297-311 | 15.159 |
| DeoR | 171-186 | 15.078 |
| Fis | 168-188 | 14.904 |
| FadR | 203-219 | 14.658 |
| MarA | 328-348 | 14.484 |
| PhoB | 204-223 | 13.504 |
| SoxS | 293-310 | 13.406 |
| CpxR | 193-207 | 13.001 |
| XylR | 278-295 | 12.713 |
| ArgP | 338-350 | 12.103 |
| Lrp | 264-275 | 11.890 |
| MelR | 205-222 | 11.868 |
| FruR | 119-136 | 11.693 |
| Nac | 272-286 | 11.604 |
| NorR | 287-303 | 11.031 |
| MetR | 179-202 | 10.857 |
| GlpR | 301-320 | 10.795 |
| ModE | 269-295 | 10.749 |
| IdnR | 292-307 | 10.570 |
| GntR | 205-224 | 10.118 |
| AraC | 55-72 | 10.105 |
| PspF | 225-241 | 9.997 |
| CaiF | 355-399 | 9.749 |
| PurR | 323-338 | 9.674 |
| NarP | 161-167 | 9.477 |
| NarL | 78-84 | 9.240 |
| GalS | 135-150 | 8.683 |
| GalR | 135-150 | 8.683 |
| RhaS | 343-359 | 8.621 |
| DnaA | 153-161 | 8.280 |
| FhlA | 111-150 | 7.676 |
| LexA | 240-259 | 6.696 |
| TorR | 207-216 | 6.536 |
| CueR | 32-50 | 6.164 |
| TrpR | 112-129 | 6.159 |
| MetJ | 123-130 | 6.057 |
| NtrC | 277-293 | 5.902 |
| LacI | 12-32 | 5.831 |