| TF name | Position | PWM scan score |
| ArcA | 31-91 | 24.155 |
| NagC | 59-81 | 17.423 |
| Rob | 143-163 | 17.046 |
| AgaR | 53-76 | 16.230 |
| CysB | 42-83 | 16.147 |
| Mlc | 120-142 | 14.892 |
| FNR | 56-77 | 14.592 |
| OmpR | 118-137 | 14.272 |
| ArgP | 119-131 | 14.205 |
| Fis | 73-93 | 13.919 |
| RcsB | 371-384 | 13.906 |
| MarA | 209-229 | 13.885 |
| PhoB | 129-148 | 13.844 |
| Ada | 118-145 | 13.624 |
| DeoR | 116-131 | 13.419 |
| H-NS | 1-15 | 13.206 |
| Fur | 73-87 | 12.736 |
| IHF | 61-73 | 12.705 |
| UxuR | 14-31 | 12.422 |
| CRP | 257-278 | 12.397 |
| CytR | 59-98 | 12.336 |
| CpxR | 116-130 | 12.336 |
| ModE | 14-40 | 12.235 |
| GadE | 118-137 | 12.234 |
| Nac | 375-389 | 11.729 |
| PhoP | 310-326 | 11.654 |
| SoxS | 211-228 | 11.115 |
| XylR | 130-147 | 11.055 |
| DnaA | 20-28 | 10.846 |
| DcuR | 8-62 | 10.805 |
| PspF | 1-17 | 10.712 |
| UlaR | 119-138 | 10.675 |
| IdnR | 59-74 | 10.597 |
| GcvA | 9-37 | 10.339 |
| FruR | 141-158 | 10.097 |
| ArgR | 248-263 | 10.049 |
| Lrp | 118-129 | 9.979 |
| GalR | 141-156 | 9.953 |
| GalS | 141-156 | 9.953 |
| GntR | 194-213 | 9.938 |
| GlpR | 3-22 | 9.761 |
| MelR | 79-96 | 9.636 |
| TorR | 55-64 | 9.517 |
| AraC | 305-322 | 9.429 |
| OxyR | 17-61 | 9.311 |
| RhaS | 317-333 | 8.739 |
| LexA | 117-136 | 8.595 |
| NarP | 145-151 | 8.575 |
| NarL | 20-26 | 8.131 |
| MetR | 71-94 | 8.090 |
| MetJ | 369-376 | 7.925 |
| FhlA | 287-326 | 7.118 |
| TyrR | 190-211 | 6.538 |
| LacI | 204-224 | 5.921 |
| TrpR | 348-365 | 5.889 |
| NorR | 54-70 | 5.830 |
| PurR | 141-156 | 5.351 |