| TF name | Position | PWM scan score |
| ArcA | 334-394 | 25.603 |
| CysB | 341-382 | 22.480 |
| OxyR | 173-217 | 19.194 |
| GadE | 229-248 | 18.818 |
| CytR | 337-376 | 17.336 |
| CRP | 361-382 | 16.828 |
| NagC | 320-342 | 16.108 |
| FNR | 55-76 | 15.845 |
| AgaR | 361-384 | 15.740 |
| GcvA | 181-209 | 15.572 |
| PhoB | 301-320 | 15.176 |
| H-NS | 370-384 | 14.804 |
| Fis | 7-27 | 14.501 |
| TyrR | 365-386 | 14.271 |
| RcsB | 4-17 | 13.990 |
| UxuR | 361-378 | 13.936 |
| DnaA | 162-170 | 13.919 |
| ArgR | 144-159 | 13.071 |
| IdnR | 93-108 | 13.061 |
| OmpR | 333-352 | 12.992 |
| ModE | 314-340 | 12.268 |
| Mlc | 318-340 | 12.132 |
| IHF | 126-138 | 11.732 |
| SoxS | 165-182 | 11.665 |
| PhoP | 128-144 | 11.658 |
| AraC | 281-298 | 11.506 |
| UlaR | 326-345 | 11.240 |
| LacI | 29-49 | 11.122 |
| GntR | 335-354 | 11.037 |
| DcuR | 341-395 | 10.893 |
| Nac | 371-385 | 10.886 |
| Ada | 52-79 | 10.871 |
| TorR | 337-346 | 10.659 |
| CpxR | 129-143 | 10.610 |
| Lrp | 319-330 | 10.434 |
| Rob | 184-204 | 10.331 |
| XylR | 96-113 | 10.255 |
| DeoR | 376-391 | 10.104 |
| MarA | 286-306 | 10.082 |
| NorR | 186-202 | 9.943 |
| GlpR | 9-28 | 9.323 |
| MetR | 71-94 | 8.990 |
| PspF | 305-321 | 8.986 |
| NarL | 248-254 | 8.728 |
| ArgP | 172-184 | 8.674 |
| NarP | 203-209 | 8.594 |
| MelR | 352-369 | 7.749 |
| FruR | 331-348 | 7.585 |
| LexA | 336-355 | 7.197 |
| Fur | 115-129 | 6.667 |
| MetJ | 1-8 | 6.292 |
| FhlA | 10-49 | 6.235 |
| PurR | 96-111 | 6.153 |
| GalS | 247-262 | 5.335 |
| GalR | 247-262 | 5.335 |
| NtrC | 82-98 | 5.022 |