| TF name | Position | PWM scan score |
| ArcA | 233-293 | 18.303 |
| FNR | 240-261 | 16.102 |
| CRP | 257-278 | 15.607 |
| PhoB | 278-297 | 15.266 |
| GcvA | 347-375 | 14.594 |
| CysB | 346-387 | 14.001 |
| RcsB | 372-385 | 13.664 |
| ArgR | 281-296 | 13.553 |
| OmpR | 285-304 | 13.018 |
| XylR | 349-366 | 12.887 |
| OxyR | 15-59 | 12.496 |
| UlaR | 207-226 | 12.401 |
| Rob | 25-45 | 12.082 |
| AraC | 78-95 | 11.947 |
| H-NS | 352-366 | 11.687 |
| RhaS | 204-220 | 11.677 |
| Fis | 278-298 | 11.393 |
| DeoR | 158-173 | 11.335 |
| Lrp | 80-91 | 10.972 |
| AgaR | 202-225 | 10.562 |
| PspF | 275-291 | 10.534 |
| IdnR | 145-160 | 10.392 |
| Nac | 82-96 | 10.311 |
| TorR | 203-212 | 10.214 |
| IHF | 204-216 | 10.184 |
| MarA | 87-107 | 10.073 |
| SoxS | 26-43 | 9.903 |
| Fur | 249-263 | 9.853 |
| CytR | 93-132 | 9.728 |
| TyrR | 281-302 | 9.692 |
| PhoP | 347-363 | 9.677 |
| CpxR | 46-60 | 9.543 |
| ModE | 204-230 | 9.193 |
| NarL | 355-361 | 9.129 |
| NagC | 339-361 | 8.533 |
| UxuR | 290-307 | 7.973 |
| DnaA | 232-240 | 7.695 |
| FadR | 161-177 | 7.569 |
| ArgP | 289-301 | 7.481 |
| GadE | 341-360 | 7.376 |
| NarP | 57-63 | 7.325 |
| GlpR | 6-25 | 7.183 |
| DcuR | 271-325 | 6.991 |
| MelR | 278-295 | 6.869 |
| NorR | 34-50 | 6.827 |
| GntR | 255-274 | 6.552 |
| Mlc | 125-147 | 6.411 |
| GalS | 313-328 | 6.080 |
| GalR | 313-328 | 6.080 |
| MetJ | 246-253 | 6.031 |
| MetR | 256-279 | 5.899 |
| NtrC | 282-298 | 5.776 |
| PurR | 78-93 | 5.758 |
| LacI | 164-184 | 5.653 |
| LexA | 173-192 | 5.473 |
| Ada | 210-237 | 5.136 |
| MalT | 147-156 | 5.004 |