| TF name | Position | PWM scan score |
| ArcA | 270-330 | 33.602 |
| CysB | 206-247 | 28.791 |
| CytR | 342-381 | 23.577 |
| OxyR | 353-397 | 22.846 |
| MetR | 204-227 | 20.308 |
| GadE | 203-222 | 19.679 |
| OmpR | 265-284 | 19.642 |
| AgaR | 192-215 | 19.107 |
| FhlA | 219-258 | 19.055 |
| DcuR | 172-226 | 18.309 |
| PhoP | 263-279 | 17.966 |
| FNR | 284-305 | 16.713 |
| CRP | 205-226 | 16.641 |
| NagC | 350-372 | 16.604 |
| Rob | 118-138 | 16.599 |
| Fur | 291-305 | 16.133 |
| Fis | 236-256 | 15.695 |
| UlaR | 191-210 | 15.605 |
| H-NS | 266-280 | 15.565 |
| UxuR | 357-374 | 15.541 |
| CpxR | 264-278 | 15.522 |
| TyrR | 291-312 | 15.342 |
| IHF | 92-104 | 15.224 |
| Ada | 352-379 | 14.665 |
| Mlc | 348-370 | 14.255 |
| GcvA | 290-318 | 13.891 |
| RcsB | 312-325 | 13.659 |
| Nac | 201-215 | 12.931 |
| SoxS | 230-247 | 12.454 |
| IdnR | 229-244 | 12.158 |
| ArgP | 242-254 | 12.063 |
| ArgR | 287-302 | 11.847 |
| Lrp | 62-73 | 11.808 |
| ModE | 311-337 | 11.797 |
| PhoB | 291-310 | 11.317 |
| AraC | 361-378 | 11.262 |
| MarA | 146-166 | 11.135 |
| GalR | 171-186 | 10.602 |
| GalS | 171-186 | 10.602 |
| MelR | 214-231 | 10.376 |
| DeoR | 8-23 | 9.968 |
| XylR | 339-356 | 9.779 |
| GntR | 25-44 | 9.693 |
| TorR | 202-211 | 9.465 |
| NarL | 313-319 | 9.444 |
| GlpR | 369-388 | 8.520 |
| DnaA | 207-215 | 8.160 |
| NarP | 353-359 | 7.965 |
| PspF | 254-270 | 7.915 |
| FruR | 361-378 | 7.702 |
| RhaS | 139-155 | 7.032 |
| LexA | 285-304 | 6.654 |
| NorR | 187-203 | 6.535 |
| TrpR | 151-168 | 6.335 |
| LacI | 223-243 | 6.217 |
| MetJ | 320-327 | 6.080 |
| MalT | 60-69 | 5.303 |