| TF name | Position | PWM scan score |
| ArcA | 19-79 | 40.738 |
| CysB | 195-236 | 22.945 |
| CytR | 77-116 | 22.028 |
| OmpR | 379-398 | 20.783 |
| NagC | 19-41 | 19.355 |
| Fur | 72-86 | 18.245 |
| CRP | 201-222 | 18.235 |
| FNR | 212-233 | 17.966 |
| MarA | 364-384 | 17.929 |
| GcvA | 50-78 | 17.857 |
| DcuR | 72-126 | 17.843 |
| GlpR | 191-210 | 17.554 |
| OxyR | 20-64 | 17.299 |
| ArgP | 76-88 | 16.570 |
| Mlc | 12-34 | 16.543 |
| IHF | 12-24 | 16.535 |
| GadE | 212-231 | 16.335 |
| PhoB | 32-51 | 16.258 |
| AgaR | 322-345 | 15.560 |
| Rob | 75-95 | 15.311 |
| Fis | 46-66 | 15.287 |
| SoxS | 186-203 | 15.220 |
| PhoP | 47-63 | 15.216 |
| CpxR | 140-154 | 14.780 |
| H-NS | 30-44 | 14.246 |
| XylR | 71-88 | 14.054 |
| TyrR | 51-72 | 13.991 |
| GntR | 379-398 | 13.967 |
| MelR | 199-216 | 13.631 |
| ArgR | 49-64 | 13.076 |
| UlaR | 297-316 | 13.014 |
| RcsB | 107-120 | 12.763 |
| IdnR | 184-199 | 12.336 |
| Lrp | 379-390 | 11.852 |
| MetR | 113-136 | 11.769 |
| Nac | 253-267 | 11.668 |
| UxuR | 8-25 | 11.606 |
| PspF | 78-94 | 11.434 |
| ModE | 352-378 | 11.288 |
| NorR | 256-272 | 10.826 |
| Ada | 274-301 | 10.485 |
| LexA | 104-123 | 10.055 |
| FhlA | 300-339 | 10.037 |
| NarL | 80-86 | 9.444 |
| TorR | 265-274 | 9.392 |
| PurR | 271-286 | 9.156 |
| DeoR | 49-64 | 8.776 |
| DnaA | 63-71 | 8.323 |
| FruR | 234-251 | 8.064 |
| FadR | 27-43 | 7.840 |
| AraC | 255-272 | 7.522 |
| NarP | 335-341 | 7.325 |
| CueR | 271-289 | 7.061 |
| GalS | 73-88 | 6.694 |
| GalR | 73-88 | 6.694 |
| LacI | 62-82 | 6.650 |
| CaiF | 21-65 | 6.329 |
| RhaS | 255-271 | 5.070 |