| TF name | Position | PWM scan score |
| ArcA | 228-288 | 28.240 |
| OmpR | 77-96 | 21.751 |
| NagC | 248-270 | 19.502 |
| FNR | 249-270 | 17.871 |
| CysB | 238-279 | 15.812 |
| PhoB | 282-301 | 14.652 |
| GadE | 266-285 | 14.140 |
| CRP | 267-288 | 14.043 |
| Rob | 352-372 | 13.395 |
| UlaR | 255-274 | 12.826 |
| MarA | 200-220 | 12.815 |
| RcsB | 262-275 | 12.518 |
| DeoR | 269-284 | 12.432 |
| H-NS | 44-58 | 12.391 |
| OxyR | 92-136 | 11.750 |
| ArgR | 289-304 | 11.394 |
| GcvA | 290-318 | 11.337 |
| IHF | 270-282 | 11.317 |
| Lrp | 249-260 | 11.261 |
| CytR | 213-252 | 11.251 |
| GntR | 77-96 | 11.175 |
| GlpR | 79-98 | 11.131 |
| Nac | 265-279 | 10.727 |
| RhaS | 368-384 | 10.528 |
| PhoP | 292-308 | 10.450 |
| SoxS | 39-56 | 10.442 |
| Fis | 80-100 | 9.701 |
| PspF | 1-17 | 9.453 |
| TyrR | 162-183 | 9.338 |
| Ada | 235-262 | 9.229 |
| NarL | 104-110 | 9.129 |
| DcuR | 236-290 | 9.026 |
| GalS | 75-90 | 9.020 |
| GalR | 75-90 | 9.020 |
| LacI | 64-84 | 8.970 |
| ArgP | 272-284 | 8.294 |
| Mlc | 315-337 | 8.266 |
| XylR | 177-194 | 8.157 |
| DnaA | 269-277 | 8.112 |
| CpxR | 247-261 | 8.045 |
| IdnR | 380-395 | 7.981 |
| FadR | 301-317 | 7.633 |
| NarP | 152-158 | 7.347 |
| AraC | 241-258 | 7.335 |
| AgaR | 245-268 | 7.114 |
| MetJ | 332-339 | 7.009 |
| UxuR | 266-283 | 6.976 |
| ModE | 283-309 | 6.505 |
| TorR | 171-180 | 6.399 |
| Fur | 168-182 | 6.204 |
| PurR | 55-70 | 6.059 |
| MelR | 276-293 | 5.993 |
| MetR | 176-199 | 5.884 |
| NtrC | 244-260 | 5.871 |