| TF name | Position | PWM scan score |
| ArcA | 209-269 | 31.885 |
| OxyR | 209-253 | 21.966 |
| CysB | 254-295 | 20.953 |
| DcuR | 167-221 | 19.038 |
| GlpR | 280-299 | 18.562 |
| OmpR | 295-314 | 17.960 |
| PhoP | 331-347 | 17.322 |
| CytR | 235-274 | 17.100 |
| GcvA | 205-233 | 16.762 |
| AraC | 302-319 | 15.686 |
| GadE | 355-374 | 15.388 |
| FNR | 281-302 | 14.874 |
| NagC | 214-236 | 14.637 |
| Fis | 298-318 | 14.605 |
| PhoB | 296-315 | 14.356 |
| H-NS | 308-322 | 13.726 |
| AgaR | 219-242 | 13.549 |
| IHF | 217-229 | 13.463 |
| UlaR | 224-243 | 13.173 |
| CRP | 253-274 | 12.809 |
| SoxS | 226-243 | 12.591 |
| LacI | 131-151 | 11.663 |
| NorR | 222-238 | 11.370 |
| Rob | 293-313 | 11.066 |
| Mlc | 212-234 | 11.013 |
| Ada | 194-221 | 10.683 |
| ModE | 298-324 | 10.636 |
| TyrR | 229-250 | 10.527 |
| CpxR | 192-206 | 10.510 |
| RcsB | 305-318 | 10.395 |
| ArgR | 86-101 | 10.351 |
| MarA | 60-80 | 10.103 |
| Lrp | 144-155 | 9.898 |
| FadR | 221-237 | 9.583 |
| Nac | 111-125 | 9.366 |
| FruR | 228-245 | 9.267 |
| DnaA | 230-238 | 9.246 |
| XylR | 336-353 | 9.129 |
| PurR | 89-104 | 8.995 |
| Fur | 217-231 | 8.900 |
| DeoR | 192-207 | 8.663 |
| MelR | 171-188 | 8.272 |
| TorR | 253-262 | 7.963 |
| NarL | 388-394 | 7.950 |
| RhaS | 14-30 | 7.775 |
| ArgP | 279-291 | 7.773 |
| MetR | 185-208 | 7.679 |
| NtrC | 275-291 | 7.658 |
| CueR | 43-61 | 7.242 |
| IdnR | 225-240 | 6.635 |
| PspF | 295-311 | 6.438 |
| GntR | 253-272 | 6.202 |
| MetJ | 391-398 | 6.057 |
| LexA | 158-177 | 5.962 |
| CaiF | 274-318 | 5.797 |
| MalT | 148-157 | 5.789 |
| GalS | 303-318 | 5.283 |
| GalR | 303-318 | 5.283 |