| TF name | Position | PWM scan score |
| ArcA | 287-347 | 27.904 |
| OxyR | 251-295 | 20.869 |
| UlaR | 370-389 | 17.987 |
| Fur | 361-375 | 17.721 |
| GcvA | 305-333 | 16.028 |
| FNR | 277-298 | 15.204 |
| H-NS | 96-110 | 15.112 |
| CytR | 5-44 | 14.935 |
| OmpR | 308-327 | 14.319 |
| DeoR | 344-359 | 14.272 |
| PhoP | 288-304 | 14.248 |
| CRP | 292-313 | 14.214 |
| IHF | 361-373 | 13.709 |
| CysB | 287-328 | 13.667 |
| AgaR | 354-377 | 13.461 |
| Nac | 261-275 | 13.439 |
| DnaA | 13-21 | 13.187 |
| GntR | 353-372 | 13.113 |
| Ada | 298-325 | 12.818 |
| GadE | 298-317 | 12.731 |
| RcsB | 326-339 | 12.384 |
| SoxS | 103-120 | 11.833 |
| Fis | 298-318 | 11.607 |
| PhoB | 140-159 | 11.025 |
| ArgP | 97-109 | 10.636 |
| CpxR | 308-322 | 10.537 |
| ArgR | 7-22 | 10.412 |
| Lrp | 328-339 | 10.343 |
| FadR | 351-367 | 9.812 |
| MetR | 359-382 | 9.803 |
| TorR | 280-289 | 9.794 |
| TyrR | 34-55 | 9.730 |
| Rob | 284-304 | 9.494 |
| MalT | 175-184 | 9.118 |
| RhaS | 226-242 | 9.112 |
| AraC | 32-49 | 8.905 |
| XylR | 307-324 | 8.878 |
| MarA | 277-297 | 8.756 |
| FruR | 175-192 | 8.689 |
| UxuR | 28-45 | 8.396 |
| DcuR | 318-372 | 8.173 |
| IdnR | 361-376 | 8.062 |
| ModE | 313-339 | 7.758 |
| NarP | 157-163 | 7.740 |
| GlpR | 276-295 | 7.652 |
| NorR | 111-127 | 7.626 |
| NarL | 363-369 | 7.200 |
| MelR | 88-105 | 6.597 |
| PspF | 358-374 | 6.401 |
| LacI | 9-29 | 6.368 |
| FhlA | 81-120 | 5.879 |
| NtrC | 338-354 | 5.362 |
| Mlc | 291-313 | 5.261 |
| PurR | 36-51 | 5.018 |