| TF name | Position | PWM scan score |
| ArcA | 210-270 | 23.722 |
| CaiF | 235-279 | 23.353 |
| GlpR | 76-95 | 20.644 |
| Fis | 242-262 | 18.871 |
| CysB | 224-265 | 18.114 |
| MarA | 206-226 | 16.790 |
| CytR | 218-257 | 16.638 |
| UlaR | 227-246 | 14.256 |
| IHF | 5-17 | 14.054 |
| GadE | 99-118 | 14.009 |
| PhoB | 50-69 | 13.903 |
| SoxS | 365-382 | 13.203 |
| Fur | 242-256 | 13.061 |
| TorR | 151-160 | 13.033 |
| RcsB | 152-165 | 12.980 |
| OxyR | 215-259 | 12.789 |
| FNR | 43-64 | 12.725 |
| Mlc | 232-254 | 12.637 |
| XylR | 150-167 | 12.549 |
| CRP | 250-271 | 12.517 |
| Ada | 265-292 | 12.193 |
| CpxR | 154-168 | 12.085 |
| OmpR | 50-69 | 12.080 |
| DeoR | 47-62 | 11.759 |
| GalR | 320-335 | 11.336 |
| GalS | 320-335 | 11.336 |
| AraC | 152-169 | 11.266 |
| Rob | 248-268 | 11.246 |
| UxuR | 10-27 | 11.173 |
| Lrp | 157-168 | 10.902 |
| PspF | 9-25 | 10.789 |
| NagC | 208-230 | 10.622 |
| Nac | 78-92 | 10.220 |
| ArgP | 318-330 | 10.034 |
| H-NS | 43-57 | 9.742 |
| CueR | 111-129 | 9.488 |
| ArgR | 1-16 | 9.322 |
| IdnR | 214-229 | 9.321 |
| DcuR | 138-192 | 9.130 |
| NarL | 153-159 | 9.129 |
| AgaR | 362-385 | 8.921 |
| TyrR | 42-63 | 8.894 |
| ModE | 224-250 | 8.833 |
| MelR | 74-91 | 8.811 |
| GcvA | 172-200 | 8.799 |
| LexA | 202-221 | 8.507 |
| PhoP | 364-380 | 8.504 |
| MetR | 212-235 | 8.458 |
| NorR | 45-61 | 8.093 |
| MetJ | 254-261 | 7.996 |
| FhlA | 40-79 | 7.703 |
| FruR | 253-270 | 7.530 |
| GntR | 185-204 | 7.306 |
| MalT | 113-122 | 6.636 |
| NtrC | 172-188 | 6.628 |
| DnaA | 22-30 | 6.291 |
| RhaS | 242-258 | 6.134 |
| NarP | 194-200 | 5.342 |