| TF name | Position | PWM scan score |
| ArcA | 331-391 | 27.217 |
| OmpR | 215-234 | 19.180 |
| DcuR | 297-351 | 19.156 |
| CRP | 214-235 | 18.999 |
| XylR | 211-228 | 17.394 |
| GadE | 221-240 | 16.990 |
| CytR | 343-382 | 16.363 |
| NagC | 376-398 | 16.183 |
| IHF | 369-381 | 16.084 |
| H-NS | 345-359 | 15.232 |
| OxyR | 47-91 | 14.962 |
| PhoB | 213-232 | 14.825 |
| FNR | 370-391 | 14.824 |
| Fis | 348-368 | 14.773 |
| ModE | 206-232 | 14.408 |
| CysB | 28-69 | 14.287 |
| Mlc | 369-391 | 14.257 |
| GlpR | 378-397 | 14.252 |
| Nac | 221-235 | 13.825 |
| GcvA | 371-399 | 13.601 |
| Rob | 4-24 | 13.295 |
| CpxR | 44-58 | 13.232 |
| MarA | 215-235 | 13.107 |
| UxuR | 270-287 | 13.053 |
| ArgP | 368-380 | 12.975 |
| Fur | 373-387 | 12.930 |
| PspF | 214-230 | 12.861 |
| ArgR | 209-224 | 12.688 |
| AgaR | 292-315 | 12.646 |
| DeoR | 44-59 | 12.237 |
| TyrR | 136-157 | 12.067 |
| UlaR | 365-384 | 12.047 |
| AraC | 370-387 | 11.847 |
| RcsB | 373-386 | 11.598 |
| PhoP | 353-369 | 11.003 |
| Lrp | 279-290 | 10.763 |
| MelR | 255-272 | 10.048 |
| IdnR | 77-92 | 10.026 |
| MetR | 29-52 | 9.930 |
| NarL | 26-32 | 9.580 |
| SoxS | 360-377 | 9.489 |
| TorR | 293-302 | 9.041 |
| DnaA | 26-34 | 9.025 |
| GntR | 166-185 | 8.375 |
| FhlA | 275-314 | 8.275 |
| MetJ | 82-89 | 7.917 |
| Ada | 199-226 | 7.782 |
| FruR | 274-291 | 7.660 |
| NorR | 216-232 | 7.462 |
| GalR | 26-41 | 7.391 |
| GalS | 26-41 | 7.391 |
| FadR | 17-33 | 7.149 |
| LexA | 380-399 | 7.068 |
| LacI | 377-397 | 6.798 |
| NarP | 46-52 | 6.591 |
| PurR | 337-352 | 6.262 |
| NtrC | 161-177 | 5.882 |
| MalT | 238-247 | 5.848 |
| RhaS | 206-222 | 5.596 |