| TF name | Position | PWM scan score |
| ArcA | 329-389 | 27.944 |
| Mlc | 330-352 | 19.966 |
| NagC | 332-354 | 19.894 |
| OmpR | 327-346 | 19.183 |
| CysB | 300-341 | 19.122 |
| MelR | 302-319 | 18.701 |
| GadE | 281-300 | 18.354 |
| ArgR | 339-354 | 17.397 |
| CytR | 197-236 | 17.258 |
| CRP | 329-350 | 17.165 |
| GlpR | 378-397 | 16.617 |
| FNR | 255-276 | 16.444 |
| PurR | 31-46 | 16.263 |
| H-NS | 293-307 | 15.267 |
| AgaR | 244-267 | 14.786 |
| OxyR | 340-384 | 14.170 |
| Rob | 249-269 | 13.888 |
| Nac | 364-378 | 13.432 |
| IHF | 343-355 | 13.048 |
| Fur | 246-260 | 13.038 |
| AraC | 224-241 | 13.010 |
| RcsB | 327-340 | 12.863 |
| Ada | 76-103 | 12.761 |
| Fis | 332-352 | 12.759 |
| GcvA | 107-135 | 12.580 |
| PhoB | 366-385 | 12.574 |
| CpxR | 333-347 | 12.474 |
| PhoP | 342-358 | 12.350 |
| DcuR | 310-364 | 12.286 |
| ArgP | 374-386 | 12.280 |
| SoxS | 64-81 | 11.904 |
| MarA | 130-150 | 11.703 |
| Lrp | 110-121 | 10.725 |
| DeoR | 382-397 | 10.695 |
| GntR | 177-196 | 10.653 |
| ModE | 258-284 | 10.264 |
| IdnR | 202-217 | 9.838 |
| TyrR | 301-322 | 9.687 |
| MalT | 94-103 | 9.634 |
| NarL | 154-160 | 9.580 |
| MetR | 3-26 | 9.381 |
| TorR | 223-232 | 9.198 |
| GalR | 31-46 | 8.756 |
| GalS | 31-46 | 8.756 |
| FruR | 94-111 | 8.739 |
| PspF | 293-309 | 8.570 |
| XylR | 301-318 | 8.551 |
| UlaR | 339-358 | 8.536 |
| DnaA | 222-230 | 8.397 |
| FhlA | 347-386 | 8.204 |
| NorR | 251-267 | 7.801 |
| NtrC | 218-234 | 7.721 |
| LexA | 55-74 | 7.336 |
| NarP | 379-385 | 6.794 |
| LacI | 350-370 | 6.744 |
| FadR | 300-316 | 5.746 |
| UxuR | 153-170 | 5.643 |
| RhaS | 30-46 | 5.517 |