| TF name | Position | PWM scan score |
| ArcA | 234-294 | 20.917 |
| Nac | 57-71 | 15.145 |
| PhoP | 255-271 | 15.056 |
| AgaR | 328-351 | 14.590 |
| GadE | 343-362 | 14.202 |
| CytR | 333-372 | 14.131 |
| DcuR | 242-296 | 13.770 |
| OmpR | 339-358 | 13.217 |
| RcsB | 257-270 | 13.195 |
| CysB | 32-73 | 13.193 |
| PhoB | 58-77 | 12.834 |
| UxuR | 261-278 | 12.509 |
| DeoR | 199-214 | 12.493 |
| Lrp | 260-271 | 12.459 |
| FNR | 99-120 | 12.402 |
| Fis | 257-277 | 12.133 |
| IHF | 336-348 | 11.917 |
| SoxS | 113-130 | 11.713 |
| H-NS | 57-71 | 11.606 |
| NagC | 245-267 | 11.201 |
| AraC | 71-88 | 11.107 |
| Rob | 44-64 | 10.991 |
| NorR | 1-17 | 10.853 |
| Ada | 269-296 | 10.686 |
| CpxR | 337-351 | 10.594 |
| DnaA | 267-275 | 10.550 |
| TyrR | 255-276 | 10.479 |
| Mlc | 335-357 | 10.237 |
| CRP | 334-355 | 9.902 |
| UlaR | 274-293 | 9.885 |
| ModE | 130-156 | 9.557 |
| FadR | 98-114 | 9.470 |
| MelR | 272-289 | 9.381 |
| PspF | 137-153 | 9.268 |
| XylR | 254-271 | 8.852 |
| MarA | 111-131 | 8.656 |
| TorR | 102-111 | 8.594 |
| ArgP | 70-82 | 8.521 |
| ArgR | 8-23 | 8.496 |
| TrpR | 128-145 | 8.418 |
| GcvA | 330-358 | 8.189 |
| Fur | 324-338 | 8.023 |
| NarL | 191-197 | 7.950 |
| LacI | 259-279 | 7.728 |
| GntR | 8-27 | 7.649 |
| MetJ | 42-49 | 7.244 |
| OxyR | 246-290 | 7.197 |
| FruR | 42-59 | 6.975 |
| NarP | 130-136 | 6.781 |
| PurR | 6-21 | 6.577 |
| LexA | 142-161 | 6.152 |
| MalT | 246-255 | 5.901 |
| MetR | 262-285 | 5.636 |
| IdnR | 232-247 | 5.295 |
| FhlA | 54-93 | 5.283 |
| NtrC | 56-72 | 5.216 |