| TF name | Position | PWM scan score |
| ArcA | 299-359 | 26.783 |
| CytR | 179-218 | 20.732 |
| CysB | 343-384 | 19.663 |
| OmpR | 5-24 | 19.130 |
| OxyR | 210-254 | 18.035 |
| UxuR | 289-306 | 17.327 |
| AgaR | 335-358 | 16.333 |
| FNR | 346-367 | 15.111 |
| CpxR | 295-309 | 15.018 |
| DcuR | 292-346 | 14.341 |
| PhoP | 331-347 | 14.032 |
| GcvA | 124-152 | 13.853 |
| IHF | 131-143 | 13.551 |
| MarA | 193-213 | 13.535 |
| XylR | 344-361 | 13.509 |
| CRP | 1-22 | 13.166 |
| ArgP | 18-30 | 13.114 |
| Nac | 15-29 | 12.886 |
| AraC | 131-148 | 12.722 |
| SoxS | 195-212 | 12.523 |
| DnaA | 129-137 | 12.481 |
| H-NS | 130-144 | 12.371 |
| ArgR | 76-91 | 12.332 |
| NagC | 336-358 | 12.074 |
| DeoR | 304-319 | 11.786 |
| GadE | 205-224 | 11.762 |
| RcsB | 14-27 | 11.608 |
| IdnR | 332-347 | 11.480 |
| Ada | 332-359 | 11.378 |
| Rob | 14-34 | 11.325 |
| GlpR | 241-260 | 11.228 |
| Fis | 352-372 | 10.929 |
| TorR | 130-139 | 10.903 |
| PhoB | 6-25 | 10.709 |
| MetR | 323-346 | 10.215 |
| Lrp | 311-322 | 10.190 |
| FhlA | 64-103 | 9.691 |
| GalS | 322-337 | 9.646 |
| GalR | 322-337 | 9.646 |
| Mlc | 339-361 | 9.447 |
| UlaR | 205-224 | 9.248 |
| NtrC | 345-361 | 9.048 |
| NorR | 9-25 | 8.976 |
| TyrR | 343-364 | 8.826 |
| ModE | 23-49 | 8.745 |
| GntR | 122-141 | 8.395 |
| PspF | 289-305 | 8.281 |
| NarL | 12-18 | 7.927 |
| MetJ | 281-288 | 7.917 |
| Fur | 326-340 | 7.605 |
| FruR | 197-214 | 7.361 |
| MalT | 260-269 | 7.131 |
| MelR | 199-216 | 6.472 |
| NarP | 99-105 | 6.195 |
| PurR | 213-228 | 5.674 |