| TF name | Position | PWM scan score |
| ArcA | 304-364 | 24.656 |
| CRP | 317-338 | 16.126 |
| CysB | 162-203 | 15.715 |
| Nac | 373-387 | 15.671 |
| MetR | 319-342 | 15.005 |
| FNR | 320-341 | 14.717 |
| AgaR | 308-331 | 14.700 |
| GadE | 11-30 | 14.202 |
| UlaR | 160-179 | 14.195 |
| CytR | 1-40 | 14.131 |
| OmpR | 317-336 | 14.103 |
| Fis | 175-195 | 13.082 |
| Lrp | 331-342 | 13.022 |
| PhoP | 266-282 | 12.879 |
| TyrR | 365-386 | 12.778 |
| NagC | 368-390 | 12.585 |
| IHF | 334-346 | 12.294 |
| DcuR | 324-378 | 12.286 |
| OxyR | 355-399 | 12.200 |
| RcsB | 368-381 | 11.822 |
| Fur | 328-342 | 11.795 |
| ArgP | 376-388 | 11.600 |
| SoxS | 322-339 | 11.557 |
| GcvA | 363-391 | 10.689 |
| CpxR | 5-19 | 10.594 |
| DeoR | 14-29 | 10.562 |
| PspF | 290-306 | 10.346 |
| Mlc | 3-25 | 10.237 |
| NarL | 312-318 | 10.130 |
| DnaA | 380-388 | 9.683 |
| NorR | 72-88 | 9.587 |
| FadR | 81-97 | 9.575 |
| ArgR | 323-338 | 9.306 |
| Rob | 295-315 | 9.104 |
| H-NS | 317-331 | 9.059 |
| GlpR | 194-213 | 8.707 |
| ModE | 326-352 | 8.678 |
| MelR | 329-346 | 8.605 |
| Ada | 359-386 | 8.524 |
| CueR | 46-64 | 8.491 |
| AraC | 362-379 | 8.421 |
| UxuR | 151-168 | 8.396 |
| TorR | 123-132 | 8.306 |
| IdnR | 120-135 | 8.159 |
| XylR | 365-382 | 8.149 |
| RhaS | 375-391 | 8.097 |
| MalT | 282-291 | 7.968 |
| MetJ | 229-236 | 7.925 |
| LexA | 170-189 | 7.850 |
| PhoB | 358-377 | 7.251 |
| MarA | 194-214 | 7.223 |
| LacI | 62-82 | 6.193 |
| FruR | 363-380 | 6.054 |
| GntR | 5-24 | 5.971 |
| NtrC | 288-304 | 5.841 |
| GalR | 256-271 | 5.474 |
| GalS | 256-271 | 5.474 |