| TF name | Position | PWM scan score |
| ArcA | 140-200 | 38.413 |
| CysB | 126-167 | 21.197 |
| CytR | 174-213 | 21.174 |
| OmpR | 150-169 | 20.221 |
| OxyR | 123-167 | 19.026 |
| H-NS | 151-165 | 17.686 |
| Mlc | 283-305 | 17.305 |
| Rob | 137-157 | 15.928 |
| NagC | 286-308 | 15.733 |
| GcvA | 279-307 | 15.268 |
| FNR | 323-344 | 14.536 |
| GadE | 162-181 | 14.496 |
| CRP | 179-200 | 13.972 |
| XylR | 155-172 | 13.582 |
| AraC | 193-210 | 13.353 |
| Ada | 343-370 | 13.295 |
| CpxR | 158-172 | 13.219 |
| AgaR | 348-371 | 13.205 |
| DcuR | 134-188 | 13.203 |
| PhoP | 330-346 | 12.972 |
| IHF | 157-169 | 12.728 |
| PspF | 271-287 | 12.693 |
| UxuR | 197-214 | 12.687 |
| UlaR | 200-219 | 12.478 |
| Fis | 117-137 | 12.387 |
| PhoB | 143-162 | 11.925 |
| CaiF | 139-183 | 11.874 |
| ArgP | 7-19 | 11.751 |
| MarA | 240-260 | 11.723 |
| SoxS | 147-164 | 11.468 |
| Nac | 207-221 | 11.462 |
| Fur | 134-148 | 10.893 |
| DeoR | 138-153 | 10.776 |
| ModE | 349-375 | 10.759 |
| TyrR | 157-178 | 10.682 |
| DnaA | 348-356 | 10.586 |
| MetR | 70-93 | 10.501 |
| FhlA | 356-395 | 9.813 |
| PurR | 278-293 | 9.793 |
| MetJ | 215-222 | 9.765 |
| TorR | 119-128 | 9.719 |
| Lrp | 280-291 | 9.207 |
| LacI | 257-277 | 9.148 |
| GntR | 233-252 | 9.072 |
| RcsB | 281-294 | 9.056 |
| NorR | 139-155 | 8.976 |
| GlpR | 283-302 | 8.755 |
| GalR | 279-294 | 8.697 |
| GalS | 279-294 | 8.697 |
| NarL | 136-142 | 8.685 |
| MelR | 381-398 | 8.061 |
| ArgR | 167-182 | 7.549 |
| IdnR | 19-34 | 7.011 |
| NarP | 78-84 | 6.229 |
| CueR | 291-309 | 6.161 |
| FadR | 59-75 | 5.952 |